View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_5 (Length: 741)
Name: NF9072_low_5
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 17 - 682
Target Start/End: Original strand, 2524018 - 2524680
Alignment:
| Q |
17 |
cactgatacctttgtgccggagacaacttaggatattaaatttgtctctttgtgtcacatttggacttgaaccccaagataccttttctaagggaagttg |
116 |
Q |
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| T |
2524018 |
cactgatacctttgtgccggagacaacttaggatattaaatttgtctctttgtgtcacatttggacttgaaccccaagatacctcttctaagggaagttg |
2524117 |
T |
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| Q |
117 |
accctacaaatttacatgagatgattgataatcatgttggttttttgggcattatttagagtttggacccagttgaaaactcattcatcatctcttgagt |
216 |
Q |
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| T |
2524118 |
accctacaaatttacatgagatgattgataatcatgttggttttttgggcattatttagagtttggacccagttgaaaactcattcatcatctcttgagt |
2524217 |
T |
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| Q |
217 |
cctgtgtggacattcaattaattatctttgtctcatattcgtttgttttagaaggggacaacttatattagtgtaatgatatgatggaaacaagattaat |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2524218 |
cctgtg--gacattcaattaattatctttgtctcatattcgtttgttttagaaggggacaacttatattagtgtaatgatatgatggaaacaagattaat |
2524315 |
T |
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| Q |
317 |
tgtaataaatccagaacatgttacttcttcatagagaattcaaattgaaggacgtttgaagataagtgatggggatggagaagatgaggacaaatttgac |
416 |
Q |
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| T |
2524316 |
tgtaataaatccagaacatgttacttcttcatagagaattcaaattgaaggacgtttgaagataagtgatggggagggagaagatgaggacaaatttgac |
2524415 |
T |
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| Q |
417 |
ctttgatagttgaattgcttatgtttctctttctaagatggataacttggtggttaaacacatcttgacactgatgattgatgtaagatatctccaatat |
516 |
Q |
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| T |
2524416 |
ctttgatagttgaattgcttatgtttctctttctaagatggataacttggtggttaaacacatcttgacactgatgattgatgtaagatatctccaata- |
2524514 |
T |
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| Q |
517 |
ttaagctagaacattttcaacatggacattgtactcaggatacggttggtcatattcgtataataagtaatggtgcatggtgaaattctgtggcagctaa |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2524515 |
ttaagctagaacattttcaacatggacattgtactcaggatacggttggtcatattcgtataataagtaatggtgcatggtgaaattctgtggcagctaa |
2524614 |
T |
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| Q |
617 |
aaatgcatacatgttgaaatttgaaagtgaggataagcaaataattaaatatcgaaactatcacat |
682 |
Q |
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| T |
2524615 |
aaatgcatacatgttgaaatttgaaagtgaggataagcaaataattaaatatcgaaactatcacat |
2524680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 725
Target Start/End: Original strand, 2524700 - 2524734
Alignment:
| Q |
691 |
cgaaattatgtatatcaatcaatatgatctttatg |
725 |
Q |
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| T |
2524700 |
cgaaattatgtatatcaatcaatatgatctttatg |
2524734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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