View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_low_53 (Length: 264)

Name: NF9072_low_53
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_low_53
NF9072_low_53
[»] chr4 (15 HSPs)
chr4 (10-264)||(48474934-48475188)
chr4 (113-188)||(48475706-48475781)
chr4 (48-110)||(15725367-15725429)
chr4 (48-110)||(49606184-49606246)
chr4 (49-110)||(9744094-9744155)
chr4 (49-110)||(11777458-11777519)
chr4 (48-110)||(23383887-23383949)
chr4 (48-110)||(29102174-29102236)
chr4 (48-110)||(46106862-46106924)
chr4 (137-175)||(50953735-50953773)
chr4 (48-110)||(54818645-54818707)
chr4 (49-110)||(26335929-26335990)
chr4 (49-110)||(52306956-52307017)
chr4 (46-110)||(13211499-13211563)
chr4 (48-104)||(20458793-20458849)
[»] chr2 (11 HSPs)
chr2 (136-258)||(1086813-1086935)
chr2 (110-173)||(1087509-1087572)
chr2 (48-110)||(1576599-1576661)
chr2 (48-110)||(33739493-33739555)
chr2 (51-110)||(23387313-23387372)
chr2 (48-110)||(11675098-11675160)
chr2 (48-110)||(18370178-18370240)
chr2 (48-110)||(34082513-34082575)
chr2 (50-110)||(16513257-16513317)
chr2 (48-106)||(32601337-32601395)
chr2 (46-110)||(768731-768795)
[»] chr3 (8 HSPs)
chr3 (134-262)||(36818039-36818167)
chr3 (133-192)||(36812636-36812695)
chr3 (48-110)||(50801750-50801812)
chr3 (48-110)||(50874068-50874130)
chr3 (144-188)||(36418640-36418684)
chr3 (48-110)||(13349311-13349373)
chr3 (52-110)||(17605649-17605707)
chr3 (50-110)||(31039513-31039573)
[»] chr6 (6 HSPs)
chr6 (46-110)||(4838464-4838528)
chr6 (49-110)||(25061836-25061897)
chr6 (134-188)||(2428291-2428345)
chr6 (48-110)||(33730701-33730763)
chr6 (49-110)||(11742505-11742566)
chr6 (50-110)||(18102872-18102932)
[»] scaffold0627 (1 HSPs)
scaffold0627 (48-110)||(4245-4307)
[»] chr8 (11 HSPs)
chr8 (48-110)||(34102949-34103011)
chr8 (48-107)||(29377924-29377983)
chr8 (48-110)||(10616240-10616302)
chr8 (48-110)||(1201618-1201680)
chr8 (48-110)||(26868109-26868171)
chr8 (48-110)||(27545709-27545771)
chr8 (48-110)||(30207116-30207178)
chr8 (48-110)||(32068971-32069033)
chr8 (48-110)||(39922460-39922522)
chr8 (48-110)||(42556631-42556693)
chr8 (70-110)||(36899708-36899748)
[»] chr5 (11 HSPs)
chr5 (24-110)||(17210186-17210270)
chr5 (48-110)||(3039045-3039107)
chr5 (48-110)||(4083909-4083971)
chr5 (48-110)||(4738103-4738165)
chr5 (48-110)||(28747934-28747996)
chr5 (48-110)||(32736431-32736493)
chr5 (47-110)||(17421865-17421928)
chr5 (51-110)||(33696224-33696283)
chr5 (48-110)||(7944458-7944520)
chr5 (53-110)||(8410584-8410641)
chr5 (49-110)||(14369938-14369999)
[»] chr7 (8 HSPs)
chr7 (48-110)||(28912269-28912331)
chr7 (49-110)||(18352263-18352324)
chr7 (24-110)||(939082-939168)
chr7 (48-110)||(9401603-9401665)
chr7 (110-188)||(27261518-27261596)
chr7 (60-110)||(38796782-38796832)
chr7 (49-110)||(6736461-6736522)
chr7 (70-110)||(19069583-19069623)
[»] chr1 (17 HSPs)
chr1 (24-110)||(10558135-10558221)
chr1 (48-110)||(16073385-16073447)
chr1 (47-110)||(158360-158423)
chr1 (47-110)||(51432033-51432096)
chr1 (48-110)||(462965-463027)
chr1 (48-110)||(13264709-13264771)
chr1 (48-110)||(16005751-16005813)
chr1 (48-110)||(20201647-20201709)
chr1 (48-110)||(26842945-26843007)
chr1 (48-110)||(36389406-36389468)
chr1 (48-110)||(45818967-45819029)
chr1 (49-110)||(50559197-50559259)
chr1 (50-110)||(3273519-3273579)
chr1 (51-110)||(3977921-3977981)
chr1 (46-110)||(13157226-13157290)
chr1 (70-110)||(32156169-32156209)
chr1 (49-105)||(33676205-33676261)
[»] scaffold1808 (1 HSPs)
scaffold1808 (48-110)||(750-812)
[»] scaffold0325 (1 HSPs)
scaffold0325 (48-110)||(6725-6787)
[»] scaffold0217 (1 HSPs)
scaffold0217 (48-110)||(20567-20629)
[»] scaffold0015 (1 HSPs)
scaffold0015 (70-110)||(9702-9742)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 48474934 - 48475188
Alignment:
Q  10 ggtggtgtggagcttatatatacatatgtatgtgtgtagggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaa 109  Q
    ||||||||||||||||||||||||||| | ||| | | |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  48474934 ggtggtgtggagcttatatatacatatatgtgtctctggggtttgctaggatacacacattagtttttattaagatgtgttttaacaaagatataactaa 48475033  T
Q  110 agggtaatgctacaacacatctaaccttttttatgaaggtgtgcattagcaacaaacacctttttattttggacaaaaataccccttttcctctttctac 209  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48475034 agggtaatgctacaacacacctaaccttttttatgaaggtgtacattagcaacaaacacctttttattttggacaaaaatacccc-tttcctctttctac 48475132  T
Q  210 aattgtgattaaatacatgtcttttaaa-acatttcatcacttctattaacatttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48475133 aattgtgattaaatacatgtcttttaaagacatttcatcacttctattaacatttt 48475188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 48475781 - 48475706
Alignment:
Q  113 gtaatgctacaacacatctaaccttttttatgaaggtgtgcattagcaacaaacacctttttattttggacaaaaa 188  Q
    ||||||||| || ||| ||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||    
T  48475781 gtaatgctataatacacctaaccttttttatgaaggtgtgtattagcaacaaatatctttttgttttggacaaaaa 48475706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 15725429 - 15725367
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||| |||||||||| |  |||||||||||||| | |||||||| |||||||||||||||    
T  15725429 gggtttgttaggatacacccactagtttttattaaggtgtgttttaacaaagatataactaaa 15725367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 49606246 - 49606184
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| | ||||||||||||| | | |||||||  |||||||||||||||    
T  49606246 gggtttgctaggatacacccattagtttttattagggtgtgttttagcaaagatataactaaa 49606184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 9744094 - 9744155
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| |  |||||||||||||  | ||||||| ||||||||||||||||    
T  9744094 ggtttgctaggatacacccactagtttttattaacgtgtgttttagtaaagatataactaaa 9744155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 11777458 - 11777519
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| |  |||||||||||||| |||||||||  |||| ||||||||||    
T  11777458 ggtttgctaggatacacccactagtttttattaaggtatgttttagcaaaggtataactaaa 11777519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 23383887 - 23383949
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  | |||||||||||| | |||||||  |||||||||||||||    
T  23383887 gggtttgctaggatacacccactggtttttattaaggtgtgttttagcaaagatataactaaa 23383949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 29102236 - 29102174
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||| |||||||||| | ||| ||||||||||| | |||||||  |||||||||||||||    
T  29102236 gggtttgttaggatacactcattaatttttattaaggtgtgttttagcaaagatataactaaa 29102174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 46106924 - 46106862
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||  | |||||||  |||||||||||||||    
T  46106924 gggtttgctaggatacacccactagtttttattaaagtgtgttttagcaaagatataactaaa 46106862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 50953735 - 50953773
Alignment:
Q  137 tttttatgaaggtgtgcattagcaacaaacaccttttta 175  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  50953735 tttttatgaaggtgtgcattagcatgaaacaccttttta 50953773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 54818707 - 54818645
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  ||| |||||||||||    
T  54818707 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaacatataactaaa 54818645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 26335990 - 26335929
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| |  |||||||||||||| | | |||||  |||||||||||||||    
T  26335990 ggtttgctaggatacacccactagtttttattaaggtgtattttagcaaagatataactaaa 26335929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 52307017 - 52306956
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| |  |||||||||||||| | |||||||  ||| |||||||||||    
T  52307017 ggtttgctaggatacactcactagtttttattaaggtgtgttttagcaaatatataactaaa 52306956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 13211499 - 13211563
Alignment:
Q  46 tagggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||| || ||||||| |  |||||||||||||| | |||||||| ||| |||||||||||    
T  13211499 tagggtttgttaagatacacccactagtttttattaaggtgtgttttaacaaaaatataactaaa 13211563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 20458793 - 20458849
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatata 104  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||    
T  20458793 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatata 20458849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 1086813 - 1086935
Alignment:
Q  136 ttttttatgaaggtgtgcattagcaacaaacacctttttattttggacaaaaataccccttttcctctttctacaattgtgattaaatacatgtctttta 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||| |||||||| |||||||| |||| ||||||    
T  1086813 ttttttatgaaggtgtgcattagcaacaaacacctttttgttttgaacaaaaata-cccatttcctctttgtacaattgggattaaatccatgcctttta 1086911  T
Q  236 aa-acatttcatcacttctattaa 258  Q
    || |||||||||||||| ||||||    
T  1086912 aagacatttcatcacttatattaa 1086935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 1087572 - 1087509
Alignment:
Q  110 agggtaatgctacaacacatctaaccttttttatgaaggtgtgcattagcaacaaacacctttt 173  Q
    |||||||||||| |||||||| | | |||||| |||||||||||||||||||||||||| ||||    
T  1087572 agggtaatgctataacacatccacctttttttgtgaaggtgtgcattagcaacaaacacttttt 1087509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 1576599 - 1576661
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | ||||||| ||||||||||||||||    
T  1576599 gggtttgctaggatacacccactagtttttattaaggtgtgttttagtaaagatataactaaa 1576661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 33739493 - 33739555
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| | ||||||||||||||| | |||||||  |||||||||||||||    
T  33739493 gggtttgctaggatacacccattagtttttattaaggtgtgttttagcaaagatataactaaa 33739555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 23387372 - 23387313
Alignment:
Q  51 tttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||| |  |||||||||||||| | |||||||| |||||||||||||||    
T  23387372 tttgctaggatacacccactagtttttattaaggtgtgttttaacaaagatataactaaa 23387313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 11675098 - 11675160
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  11675098 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 11675160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 18370178 - 18370240
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||| |||||||    |||||||||||||||| |||||||| |||||||||||||||    
T  18370178 gggtttgctaagatacacctactagtttttattaagatgtgttttaacaaagatataactaaa 18370240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 34082513 - 34082575
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  34082513 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 34082575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 16513317 - 16513257
Alignment:
Q  50 gtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  16513317 gtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 16513257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 32601337 - 32601395
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataac 106  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||    
T  32601337 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataac 32601395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 768795 - 768731
Alignment:
Q  46 tagggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||| |||||||||| |  |||||||||||||| | |||||||  ||| |||||||||||    
T  768795 tagggtttgttaggatacacccactagtttttattaaggtgtgttttagcaaaaatataactaaa 768731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 36818167 - 36818039
Alignment:
Q  134 ccttttttatgaaggtgtgcattagcaacaaacacctttttattttggacaaaaataccccttttcctctttctacaattgtgattaaatacatgtcttt 233  Q
    ||||||| ||||||||||||||||||||||  |||||||| ||||| ||||||||||||| |||| |||||| |||| ||| ||||||||||||||||||    
T  36818167 cctttttcatgaaggtgtgcattagcaacatccaccttttgattttagacaaaaatacccatttt-ctctttttacatttgggattaaatacatgtcttt 36818069  T
Q  234 taaa-acatttcatcacttctattaacatt 262  Q
    |||| |||||||| ||||||||||||||||    
T  36818068 taaagacatttcaccacttctattaacatt 36818039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 36812636 - 36812695
Alignment:
Q  133 accttttttatgaaggtgtgcattagcaacaaacacctttttattttggacaaaaatacc 192  Q
    |||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||    
T  36812636 accttttttatgaaggtgtgcattagcaacatccaccttttggttttggacaaaaatacc 36812695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 50801812 - 50801750
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  50801812 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 50801750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 50874068 - 50874130
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  50874068 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 50874130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 36418640 - 36418684
Alignment:
Q  144 gaaggtgtgcattagcaacaaacacctttttattttggacaaaaa 188  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||    
T  36418640 gaagatgtgcattagcaagaaacacctttttagtttggacaaaaa 36418684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 13349373 - 13349311
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||| |||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  13349373 gggtttgttaggatacactcactagtttttattaaggtgtgttttagcaaagatataactaaa 13349311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 17605707 - 17605649
Alignment:
Q  52 ttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  17605707 ttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 17605649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 31039513 - 31039573
Alignment:
Q  50 gtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||    |||||||||||||| | |||||||  |||||||||||||||    
T  31039513 gtttgctaggatacacctactagtttttattaaggtgtgttttagcaaagatataactaaa 31039573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 4838528 - 4838464
Alignment:
Q  46 tagggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||||| | ||||||| ||||||| | ||||||| ||||||||||||||||    
T  4838528 tagggtttgctaggatacacccattagtttctattaaggtgtgttttagtaaagatataactaaa 4838464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 25061897 - 25061836
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  25061897 ggtttgctaggatacacgcactagtttttattaaggtgtgttttagcaaagatataactaaa 25061836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 2428345 - 2428291
Alignment:
Q  134 ccttttttatgaaggtgtgcattagcaacaaacacctttttattttggacaaaaa 188  Q
    ||||||||| ||||||||||||||||||||  ||| |||||| |||| |||||||    
T  2428345 ccttttttacgaaggtgtgcattagcaacatgcacatttttactttgaacaaaaa 2428291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 33730763 - 33730701
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||   ||||||||||||||    
T  33730763 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcgaagatataactaaa 33730701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 11742566 - 11742505
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| | ||| ||||||||||| | | |||||  |||||||||||||||    
T  11742566 ggtttgctaggatacacccattaatttttattaaggtgtattttagcaaagatataactaaa 11742505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 18102932 - 18102872
Alignment:
Q  50 gtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||  |  |||||||||||||| | |||||||  |||||||||||||||    
T  18102932 gtttgctaggatacattcactagtttttattaaggtgtgttttagcaaagatataactaaa 18102872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 4307 - 4245
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||||||  |||||||||||||| | |||||||  |||||||||||||||    
T  4307 gggtttgctaggatacacacactagtttttattaaggtgtgttttagcaaagatataactaaa 4245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 34102949 - 34103011
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| || |||||||||||||| | |||||||  |||||||||||||||    
T  34102949 gggtttgctaggatacacccgctagtttttattaaggtgtgttttagcaaagatataactaaa 34103011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 29377983 - 29377924
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataact 107  Q
    |||||||||||||||||| |  |||||||||||||| | ||||||| |||||||||||||    
T  29377983 gggtttgctaggatacacccactagtttttattaaggtgtgttttagtaaagatataact 29377924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 10616240 - 10616302
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  10616240 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 10616302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 1201618 - 1201680
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  || ||||||||||| | |||||||  |||||||||||||||    
T  1201618 gggtttgctaggatacacccactaatttttattaaggtgtgttttagcaaagatataactaaa 1201680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 26868171 - 26868109
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  ||||||| |||||||    
T  26868171 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagataaaactaaa 26868109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 27545709 - 27545771
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  ||||||||||||||   |||||||  |||||||||||||||    
T  27545709 gggtttgctaggatacacccactagtttttattaaggcgtgttttagcaaagatataactaaa 27545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 30207116 - 30207178
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||| |||||||||| |  |||||||||||||| | ||||||| |||| |||||||||||    
T  30207116 gggtttgttaggatacacccactagtttttattaaggtgtgttttagtaaatatataactaaa 30207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 32068971 - 32069033
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||||    |||||||||||||| | |||||||  |||||||||||||||    
T  32068971 gggtttgctaggatacaccaactagtttttattaaggtgtgttttagcaaagatataactaaa 32069033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 39922522 - 39922460
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||| |||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  39922522 gggtttgttaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 39922460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 42556631 - 42556693
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||| | | |||||||  |||||||||||||||    
T  42556631 gggtttgctaggatacacccactagtttttattagggtgtgttttagcaaagatataactaaa 42556693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 36899708 - 36899748
Alignment:
Q  70 tagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||| | ||||||| ||||||||||||||||    
T  36899708 tagtttttattaaggtgtgttttagtaaagatataactaaa 36899748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 17210270 - 17210186
Alignment:
Q  24 tatatatacatatgtatgtgtgtagggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||| |||| ||||| |||  ||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  17210270 tatatatatatatatatgtatgt--ggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 17210186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 3039107 - 3039045
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||  | |||||||| |||||||||||||||    
T  3039107 gggtttgctaggatacacccactagtttttattaaagtgtgttttaacaaagatataactaaa 3039045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 4083971 - 4083909
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  4083971 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 4083909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 4738165 - 4738103
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  4738165 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 4738103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 28747996 - 28747934
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  28747996 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 28747934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 32736493 - 32736431
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  32736493 gggtttgctaggatacactcactagtttttattaaggtgtgttttagcaaagatataactaaa 32736431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 17421928 - 17421865
Alignment:
Q  47 agggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||||| |  || ||||||||||| | |||||||| ||| |||||||||||    
T  17421928 agggtttgctaggatacacccactaatttttattaaggtgtgttttaacaaatatataactaaa 17421865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 33696283 - 33696224
Alignment:
Q  51 tttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||| |||||||||| |  |||||||||||||| | |||||||| |||||||||||||||    
T  33696283 tttgttaggatacacccactagtttttattaaggtgtgttttaacaaagatataactaaa 33696224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 7944520 - 7944458
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||| ||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  7944520 gggttttctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 7944458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 8410584 - 8410641
Alignment:
Q  53 tgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||| ||||||||||||||| | |||||||  ||| ||||| |||||    
T  8410584 tgctaggatacacacattagtttttattaaggtgtgttttagcaaatatatatctaaa 8410641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 14369999 - 14369938
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| |  |||||||||||| | | |||||||  |||||||||||||||    
T  14369999 ggtttgctaggatacacccactagtttttattatggtgtgttttagcaaagatataactaaa 14369938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 28912331 - 28912269
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  28912331 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 28912269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 18352263 - 18352324
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| |  |||||||||||||| | ||||||| | ||||||||||||||    
T  18352263 ggtttgctaggatacacccactagtttttattaaggtgtgttttagtgaagatataactaaa 18352324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 939168 - 939082
Alignment:
Q  24 tatatatacatatgtatgtgtgtagggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||| |||| ||| | | ||||| |||||||||||||| |  || ||||||||||| | |||||||  |||||||||||||||    
T  939168 tatatatatatatatatatatatagggattgctaggatacacccactactttttattaaggtgtgttttagcaaagatataactaaa 939082  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 9401603 - 9401665
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  || ||||||||||| | |||||||  |||||||||||||||    
T  9401603 gggtttgctaggatacacccactaatttttattaaggtgtgttttagcaaagatataactaaa 9401665  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 27261596 - 27261518
Alignment:
Q  110 agggtaatgctacaacacatctaaccttttttatgaaggtgtgcattagcaacaaacacctttttattttggacaaaaa 188  Q
    |||| |||||||||||||||| | ||| |||||||||||||||  ||||||  ||||||||| |   ||||||||||||    
T  27261596 agggcaatgctacaacacatccaccctcttttatgaaggtgtgttttagcattaaacaccttgtatgtttggacaaaaa 27261518  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 38796782 - 38796832
Alignment:
Q  60 atacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||| | ||||||||||||||||| |||||||  |||||||||||||||    
T  38796782 atacactcattagtttttattaagatgtgttttagcaaagatataactaaa 38796832  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 6736461 - 6736522
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||| |  ||||||||| |||| | |||||||  |||||||||||||||    
T  6736461 ggtttgctaggatacacccactagtttttactaaggtgtgttttagcaaagatataactaaa 6736522  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 19069623 - 19069583
Alignment:
Q  70 tagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||| | ||||||| ||||||||||||||||    
T  19069623 tagtttttattaaggtgtgttttagtaaagatataactaaa 19069583  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 10558135 - 10558221
Alignment:
Q  24 tatatatacatatgtatgtgtgtagggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||| |||| ||| | | ||| |||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  10558135 tatatatatatatatatatatatagtgtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 10558221  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 16073385 - 16073447
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  16073385 gggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 16073447  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 158360 - 158423
Alignment:
Q  47 agggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||||| |  |||||||||||||| | |||||||  ||||||| |||||||    
T  158360 agggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagataaaactaaa 158423  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 51432096 - 51432033
Alignment:
Q  47 agggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||||| |  |||||||||||||| | |||||||   ||||||||||||||    
T  51432096 agggtttgctaggatacacccactagtttttattaaggtgtgttttagcgaagatataactaaa 51432033  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 462965 - 463027
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | | |||||  |||||||||||||||    
T  462965 gggtttgctaggatacacccactagtttttattaaggtgtattttagcaaagatataactaaa 463027  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 13264709 - 13264771
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||| |||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  13264709 gggtttgctaggaaacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 13264771  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 16005813 - 16005751
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  || ||||||||||| | |||||||  |||||||||||||||    
T  16005813 gggtttgctaggatacacccactaatttttattaaggtgtgttttagcaaagatataactaaa 16005751  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 20201647 - 20201709
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||| |||| | ||||||||||||||| | | |||||  |||||||||||||||    
T  20201647 gggtttgctaggacacacccattagtttttattaaggtgtcttttagcaaagatataactaaa 20201709  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 26842945 - 26843007
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||| || |  |||||||||||||| | |||||||  |||||||||||||||    
T  26842945 gggtttgctaggatatacccactagtttttattaaggtgtgttttagcaaagatataactaaa 26843007  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 36389406 - 36389468
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||||||    |||||||||||||| | ||||| | ||||||||||||||||    
T  36389406 gggtttgctaggatacacctagtagtttttattaaggtgtgtttaagtaaagatataactaaa 36389468  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 45819029 - 45818967
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||  |  |||||||||||||| |||||||||  ||| |||||||||||    
T  45819029 gggtttgctaggatacatccactagtttttattaaggtatgttttagcaaatatataactaaa 45818967  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 50559197 - 50559259
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaa-gatataactaaa 110  Q
    ||||||||||||||||| |  |||||||||||||| | |||||||| ||| ||||||||||||    
T  50559197 ggtttgctaggatacacccactagtttttattaaggtgtgttttaaaaaatgatataactaaa 50559259  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 3273579 - 3273519
Alignment:
Q  50 gtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||| |||||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  3273579 gtttgttaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 3273519  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 3977921 - 3977981
Alignment:
Q  51 tttgctaggatacacacgttagttttt-attaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||||||| |  |||||||| |||||| |||||||||  |||||||||||||||    
T  3977921 tttgctaggatacacccactagtttttgattaaggtatgttttagcaaagatataactaaa 3977981  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 13157226 - 13157290
Alignment:
Q  46 tagggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||| |||||||  |  |||||||||||||| | |||||||  |||||||||||||||    
T  13157226 tagggtttgctcggatacatccactagtttttattaagttgtgttttagcaaagatataactaaa 13157290  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 32156209 - 32156169
Alignment:
Q  70 tagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||| | |||||||| |||||||||||||||    
T  32156209 tagtttttattaaggtgtgttttaacaaagatataactaaa 32156169  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 33676261 - 33676205
Alignment:
Q  49 ggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataa 105  Q
    |||||| ||||||||||||  |||||||||||||| | | |||||| ||||||||||    
T  33676261 ggtttgataggatacacacactagtttttattaaggtgtattttaacaaagatataa 33676205  T

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Target: scaffold1808 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 812 - 750
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    ||||||||||| |||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  812 gggtttgctagaatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 750  T

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Target: scaffold0325 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 6787 - 6725
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||| ||||||| |  |||||||||||||| | |||||||  |||||||||||||||    
T  6787 gggtttgctatgatacacccactagtttttattaaggtgtgttttagcaaagatataactaaa 6725  T

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Target: scaffold0217 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 20567 - 20629
Alignment:
Q  48 gggtttgctaggatacacacgttagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||  ||| |||||||||||    
T  20567 gggtttgctaggatacacccagtagtttttattaaggtgtgttttagcaaaaatataactaaa 20629  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 9702 - 9742
Alignment:
Q  70 tagtttttattaagatatgttttaataaagatataactaaa 110  Q
    |||||||||||||| | ||||||| ||||||||||||||||    
T  9702 tagtttttattaaggtgtgttttagtaaagatataactaaa 9742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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