View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_54 (Length: 259)
Name: NF9072_low_54
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 25100245 - 25100057
Alignment:
| Q |
1 |
ttacgttggttgttatttgttaggctttttgtcattgcaattgaagaaaaaattaatttagaaaaataaaatgaggagacacatgaattcaaccaatgaa |
100 |
Q |
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| T |
25100245 |
ttacgttggttattatttgttaggctttttgtcattgcaattgaagaaaaaattaatttagaaaaataaaatgaggagacacatgaattcaatcaatgaa |
25100146 |
T |
|
| Q |
101 |
tcacacgtaggttagtggaaagagattgaagctgatgagtaacttctttactcacattttgcacgttcacgtataaattaatagtactg |
189 |
Q |
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| T |
25100145 |
tcacacgtaggttagtggaaagagattgaagctgatgagtaacttctttactcacattttgcacgttcacgtataaattaatagtactg |
25100057 |
T |
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