View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_low_57 (Length: 252)

Name: NF9072_low_57
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_low_57
NF9072_low_57
[»] chr4 (13 HSPs)
chr4 (1-252)||(2490814-2491065)
chr4 (8-183)||(2486062-2486237)
chr4 (121-252)||(5035308-5035439)
chr4 (92-250)||(2534001-2534159)
chr4 (41-252)||(2525441-2525652)
chr4 (1-251)||(2518920-2519170)
chr4 (47-252)||(2467228-2467436)
chr4 (127-250)||(2547232-2547355)
chr4 (162-252)||(2621435-2621525)
chr4 (208-252)||(2367981-2368025)
chr4 (204-252)||(2391333-2391381)
chr4 (161-189)||(2482529-2482557)
chr4 (208-252)||(5106632-5106676)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2491065 - 2490814
Alignment:
Q  1 catcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttacacaaatctccactttccctttggccctcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  2491065 catcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttggacaaatctccactttccctttggacctcaaatc 2490966  T
Q  101 gttcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtctgagacgatgaaaaatttgacatctctcacttgttatcgaatgagg 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  2490965 gctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaatttgacatctctcacttgttatcgaatgagg 2490866  T
Q  201 tttatcaacaagaatgatatcttttttattgctgattgtttccctttactcg 252  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2490865 tttatcaacaagaatgatctcttttttattgctgattgtttccctttactcg 2490814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 2486237 - 2486062
Alignment:
Q  8 caatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttacacaaatctccactttccctttggccctcaaatcgttcgct 107  Q
    ||||||||| |||||||||| | ||||||||  ||||  ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||  || ||    
T  2486237 caatatcactctctcttcccaagacaggaacagagaaagtgacctcggcgagcttcttacacatatctccactttccctttggacctcaaatcactcact 2486138  T
Q  108 ctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtctgagacgatgaaaaatttgacatctctca 183  Q
    ||||||||||| |||||| |||| |||||||   |||||||||||||  | | |||||||||||||||||||||||    
T  2486137 ctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatttgacatctctca 2486062  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 5035439 - 5035308
Alignment:
Q  121 tcagggttcccgcaaatgaattgcgagctttgtctgagacgatgaaaaatttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatat 220  Q
    |||||||||| | |||||| |||||||||||||| |||| |||||||| ||| || |||||| ||||||||| |||||| |||||||||||||||||| |    
T  5035439 tcagggttcctgaaaatgagttgcgagctttgtccgagaagatgaaaagtttaacgtctctcgcttgttatcaaatgagatttatcaacaagaatgatct 5035340  T
Q  221 cttttttattgctgattgtttccctttactcg 252  Q
     || || |||||||||||||||||||||||||    
T  5035339 tttcttgattgctgattgtttccctttactcg 5035308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 2534159 - 2534001
Alignment:
Q  92 cctcaaatcgttcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtctgagacgatgaaaaatttgacatctctcacttgttat 191  Q
    |||||||||| || |||||||| | ||   ||| ||||| | |||||| || |||||||||||  ||| |||||||||||| ||||||||||||||||||    
T  2534159 cctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgttat 2534060  T
Q  192 cgaatgaggtttatcaacaagaatgatatcttttttattgctgattgtttccctttact 250  Q
    | |||||| | |||||||||||||||| |||| || |||||||||||||||||||||||    
T  2534059 caaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttact 2534001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 252
Target Start/End: Complemental strand, 2525652 - 2525441
Alignment:
Q  41 agaagttgacctcagcgagcttcttacacaaatctccactttccctttggccctcaaatcgttcgctctctacgagccaatcagggttcccgcaaatgaa 140  Q
    ||||| ||||||||| ||| |||| |  |||||||||||||||||||| | |||||||||| || |||||||| | ||   || ||||||   ||||||     
T  2525652 agaagctgacctcagtgagtttctaaaccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgag 2525553  T
Q  141 ttgcgagctttgtctgagacgatgaaaaatttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatatcttttttattgctgattgtt 240  Q
    ||||| | ||||||  |||  ||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||| |  | || |||||||||||||    
T  2525552 ttgcgtgttttgtccaagaaaatgaaaaatttgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgattgtt 2525453  T
Q  241 tccctttactcg 252  Q
    ||||| ||||||    
T  2525452 tccctctactcg 2525441  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 2519170 - 2518920
Alignment:
Q  1 catcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttacacaaatctccactttccctttggccctcaaatc 100  Q
    ||||| |||| ||||| |||||||||| | |||||  || |||||   |||||||||||||||| ||  |||| | |||||||||||| | ||||| |||    
T  2519170 catcactcaacatcactctctcttcccaagacaggctccgagaagacaacctcagcgagcttctaaccaaaatatgcactttccctttagacctcatatc 2519071  T
Q  101 gttcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtctgagacgatgaaaaatttgacatctctcacttgttatcgaatgagg 200  Q
    | || |||||||| | || ||||   ||||   | | |  |||| |||||||||| | |  |||||||||||||||| |||||||||||||  |||||      
T  2519070 gctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttattaaatgaaa 2518971  T
Q  201 tttatcaacaagaatgatatcttttttattgctgattgtttccctttactc 251  Q
    | |||| ||||||||||| |||| || ||||||||||||||||||||||||    
T  2518970 tatatccacaagaatgatctcttcttcattgctgattgtttccctttactc 2518920  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 252
Target Start/End: Complemental strand, 2467436 - 2467228
Alignment:
Q  47 tgacctcagcgagcttcttacacaaatctccactttccctttggccctcaaatcgttcgctctctacgagccaatcagggttcccgcaaatgaattgcga 146  Q
    |||||||| ||  ||||||||  ||||||||||||||||||||| |||||||||  || |||||||| | || || | |||||| ||| |||  ||||||    
T  2467436 tgacctcaacgcacttcttaccaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcga 2467337  T
Q  147 gctttgtctgagacgatgaaaaatttgacatctctcacttgttatcgaatgaggtt---tatcaacaagaatgatatcttttttattgctgattgtttcc 243  Q
    ||||| ||  |   |||||||||||||||||| ||||||||||| |||||    ||   |||| ||||||| ||| | || || ||||||||||||||||    
T  2467336 gctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttcc 2467237  T
Q  244 ctttactcg 252  Q
    |||||||||    
T  2467236 ctttactcg 2467228  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 2547355 - 2547232
Alignment:
Q  127 ttcccgcaaatgaattgcgagctttgtctgagacgatgaaaaatttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatatcttttt 226  Q
    |||| |||||||  ||||||||||||||||| | ||||||||||||||| ||||||| |||||    ||| |  ||||||| |||||||||| | || ||    
T  2547355 ttcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattctt 2547256  T
Q  227 tattgctgattgtttccctttact 250  Q
     |||||||||||||||||||||||    
T  2547255 cattgctgattgtttccctttact 2547232  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 2621435 - 2621525
Alignment:
Q  162 atgaaaaatttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatatcttttttattgctgattgtttccctttactcg 252  Q
    ||||||||||||||||||||||||||||| ||||| |     |||  |||||||||| | || ||  ||||||||||||||||||||||||    
T  2621435 atgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttccttgctgattgtttccctttactcg 2621525  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 2367981 - 2368025
Alignment:
Q  208 acaagaatgatatcttttttattgctgattgtttccctttactcg 252  Q
    |||||| |||| |||| || |||||||||||||||||||||||||    
T  2367981 acaagagtgatctcttcttcattgctgattgtttccctttactcg 2368025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 2391333 - 2391381
Alignment:
Q  204 atcaacaagaatgatatcttttttattgctgattgtttccctttactcg 252  Q
    ||||||||||| |||||||| || |||| |||||| |||||||||||||    
T  2391333 atcaacaagaaggatatcttcttcattgttgattgcttccctttactcg 2391381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 2482557 - 2482529
Alignment:
Q  161 gatgaaaaatttgacatctctcacttgtt 189  Q
    |||||||||||||||||||||||||||||    
T  2482557 gatgaaaaatttgacatctctcacttgtt 2482529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 5106632 - 5106676
Alignment:
Q  208 acaagaatgatatcttttttattgctgattgtttccctttactcg 252  Q
    |||||| |||| |||| || |||||||||||||||||||||||||    
T  5106632 acaagagtgatctcttcttcattgctgattgtttccctttactcg 5106676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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