View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_58 (Length: 241)
Name: NF9072_low_58
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48475302 - 48475524
Alignment:
| Q |
1 |
tcaattgagcgttttgagagaaacccatttttggaaattttgttgatctaatttcatgtactggcctgcaacagtgccacggctgggatccattttctag |
100 |
Q |
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| T |
48475302 |
tcaattgagcgttttgagagaaacccatttttggaaattttgttgatctaatttcatgtactggcctgcaacagtgccacggctgggatccattttctag |
48475401 |
T |
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| Q |
101 |
tggttaagattaaacatgtgttgtcacaaatcacaagattaaaaacaaagtggttcaattgagggaagtagcttgttggaggaagctgaccaatttttgg |
200 |
Q |
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| T |
48475402 |
tggttaagattaaacatgtgttgtcacaaatcacaagattaaaaacaaagtggttcaattgagggaagtagctagttggaggaagctgaccaatttttgg |
48475501 |
T |
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| Q |
201 |
cttttggtttcaaaacaaagtgt |
223 |
Q |
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| T |
48475502 |
cttttggtttcaaaacaaagtgt |
48475524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 1087040 - 1087169
Alignment:
| Q |
13 |
tttgagagaaacccatttttggaaattttgttgatctaatttcatgtactggcctgcaacagtgccacggctgggatccattttctagtggttaagatta |
112 |
Q |
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| T |
1087040 |
tttgagaggaacccatttttggaaattctgttgatctaatttcatgtact-gtctgcaagaatgctacggctgggatccattttctagaggttaagatta |
1087138 |
T |
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| Q |
113 |
aacatgtgttgtcacaaatcacaagattaaa |
143 |
Q |
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| T |
1087139 |
aacacctattgttacaaattgcaagattaaa |
1087169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 1087242 - 1087305
Alignment:
| Q |
151 |
tggttcaattgagggaagtagcttgttggaggaagctgaccaatttttggcttttggtttcaaa |
214 |
Q |
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| T |
1087242 |
tggttcaattgagggaaggagctggttggaggaagctgaataattttttgcttttggtttcaaa |
1087305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 36817854 - 36817757
Alignment:
| Q |
1 |
tcaattgagcgttttgagagaaacccatttttggaaattttgttgatctaatttcatgtactggcctgcaacagtgccacggctgggatccattttcta |
99 |
Q |
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| T |
36817854 |
tcaattgaggattttgagagaaacccaattttaaaaattttgttgatctaatttcatgtact-gcatgcaacaatgctatcgctggaatccattttcta |
36817757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 2424175 - 2424123
Alignment:
| Q |
91 |
cattttctagtggttaagattaaacatgtgttgtcacaaatcacaagattaaa |
143 |
Q |
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|||| ||||| ||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
2424175 |
cattctctagaggttaagattaaacaagtgttgtcacaaattacaagattaaa |
2424123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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