View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_60 (Length: 224)
Name: NF9072_low_60
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 29532253 - 29532443
Alignment:
| Q |
15 |
cacagacacccaaagagagagaagaaacaatata--aatatatagtcttttgtgtcaaaaattcagtttgagaagcacttattatctttattttatgagt |
112 |
Q |
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| T |
29532253 |
cacaaacacccaaagagagagaagaaacaatatataaatatatagtcttttgtgtcaaaaattcagtttgagaagcacttactatctttattttatgagt |
29532352 |
T |
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| Q |
113 |
gggtaaattaagagtatagggtacatacctatgtcacggcgtcctaatcgtttaatctcttcttcgttggtggaaacagctatgtatcccat |
204 |
Q |
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| T |
29532353 |
gg-taaattaagagtatagggtacatacctatgtcacggcgtcctaatcgtttaatctcttcttcgttggtggaaacagctatgtatcccat |
29532443 |
T |
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