View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_low_66 (Length: 212)

Name: NF9072_low_66
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_low_66
NF9072_low_66
[»] chr4 (15 HSPs)
chr4 (20-196)||(2491043-2491220)
chr4 (29-196)||(2525672-2525841)
chr4 (45-189)||(5035544-5035689)
chr4 (46-196)||(2486222-2486373)
chr4 (69-196)||(2519148-2519276)
chr4 (126-195)||(2534231-2534300)
chr4 (44-165)||(2467476-2467598)
chr4 (44-169)||(2477510-2477636)
chr4 (50-132)||(2536564-2536647)
chr4 (55-177)||(2621163-2621286)
chr4 (44-166)||(5106305-5106428)
chr4 (64-121)||(2547522-2547580)
chr4 (45-196)||(5102079-5102231)
chr4 (66-165)||(12124770-12124870)
chr4 (66-169)||(2472034-2472138)
[»] chr5 (1 HSPs)
chr5 (54-91)||(41900257-41900294)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 2491220 - 2491043
Alignment:
Q  20 gctacttgttacccatcaccaccgcagtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccg-ttttcggtcacaatc 118  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2491220 gctacgtgtcacccatcaccaccgcagtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatc 2491121  T
Q  119 tccgatgcaacaatccctttccttaatcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctct 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2491120 tccgatgcaacaatccctttccttaatcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctct 2491043  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 2525841 - 2525672
Alignment:
Q  29 tacccatcaccaccgc-agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgttt-tcggtcacaatctccgatgc 126  Q
    |||||||||||| ||  |||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||| || || | ||||||||||||| ||||    
T  2525841 tacccatcaccaacggtagtttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgc 2525742  T
Q  127 aacaatccctttccttaatcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctct 196  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  2525741 aactatcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatatcactctctct 2525672  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 5035689 - 5035544
Alignment:
Q  45 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgttt-tcggtcacaatctccgatgcaacaatccctttcctta 143  Q
    |||||||||||||| ||  |||| |||||||||||||| |||||||| |||||||| || || | ||||| |||||| || |||||||||||||||||||    
T  5035689 agtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttcctta 5035590  T
Q  144 atcgtctctttgaaaggttccctaacattacatcaatcaatatcac 189  Q
     |||||||||||||||||||||||| ||||||||| ||||||||||    
T  5035589 gtcgtctctttgaaaggttccctaatattacatcactcaatatcac 5035544  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 2486373 - 2486222
Alignment:
Q  46 gtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccg-ttttcggtcacaatctccgatgcaacaatccctttccttaa 144  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||   |||||||||||||||| |    
T  2486373 gttttaggtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttca 2486274  T
Q  145 tcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctct 196  Q
    |||||||||| |  ||||||||||  |||||||   ||||||||| ||||||    
T  2486273 tcgtctcttttatgggttccctaatgttacatcccacaatatcactctctct 2486222  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 2519276 - 2519148
Alignment:
Q  69 tcaaaacagtttctgtccatcacaaaccgtctccgttt-tcggtcacaatctccgatgcaacaatccctttccttaatcgtctctttgaaaggttcccta 167  Q
    ||||||||||||||||||||||| |||||| | || |  || ||||||||||| |||  |||||||||||||||| ||||||||||||| |||||||| |    
T  2519276 tcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcccca 2519177  T
Q  168 acattacatcaatcaatatcaccctctct 196  Q
    || |||||||| |||| ||||| ||||||    
T  2519176 acgttacatcactcaacatcactctctct 2519148  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 2534300 - 2534231
Alignment:
Q  126 caacaatccctttccttaatcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctc 195  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||    
T  2534300 caacaatccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctctc 2534231  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 2467598 - 2467476
Alignment:
Q  44 cagtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgttt-tcggtcacaatctccgatgcaacaatccctttcctt 142  Q
    |||||||| |||||||||  ||||||||||||||||| ||||||| || ||| |||| || || || ||| | || ||||| | |||||||||||| |||    
T  2467598 cagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttactt 2467499  T
Q  143 aatcgtctctttgaaaggttccc 165  Q
     ||||||||||||||||||||||    
T  2467498 catcgtctctttgaaaggttccc 2467476  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 2477636 - 2477510
Alignment:
Q  44 cagtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgttt-tcggtcacaatctccgatgcaacaatccctttcctt 142  Q
    |||||||| |||||||||  | ||||||||| ||||||||||||| || ||| |||| || || || || ||||| ||||||  ||| ||||||| ||||    
T  2477636 cagtttcaagtctctctcggttgtctcaaaagagtttctgtccataaccaacagtcttcgattctctgtgacaatttccgatcaaaccatcccttccctt 2477537  T
Q  143 aatcgtctctttgaaaggttccctaac 169  Q
     ||| ||||||| ||||||||||||||    
T  2477536 catcctctctttcaaaggttccctaac 2477510  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 2536647 - 2536564
Alignment:
Q  50 caggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccg-ttttcggtcacaatctccgatgcaacaat 132  Q
    |||||||||||| ||| | ||||||||||||||||||||||| |||| ||| || || | ||||| ||||||||| ||||||||    
T  2536647 caggtctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctccgaggcaacaat 2536564  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 2621163 - 2621286
Alignment:
Q  55 ctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgttt-tcggtcacaatctccgatgcaacaatccctttccttaatcgtctctt 153  Q
    ||||||| ||||| || ||||||||| |||||||||| |||||||| || || ||  ||||||||||||||  ||| ||||||||| ||  ||| |||||    
T  2621163 ctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 2621262  T
Q  154 tgaaaggttccctaacattacatc 177  Q
     || ||||||||||| || |||||    
T  2621263 cgacaggttccctaatatcacatc 2621286  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 5106305 - 5106428
Alignment:
Q  44 cagtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgt-ctccgttttcggtcacaatctccgatgcaacaatccctttcctt 142  Q
    |||||||| |||||||||   |||||||||||||||| |||||||||| |||||| |||  || |||||||||||| |  ||  ||| ||||||||| ||    
T  5106305 cagtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcatt 5106404  T
Q  143 aatcgtctctttgaaaggttccct 166  Q
     |||| |||||  |||||||||||    
T  5106405 catcgcctcttcaaaaggttccct 5106428  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 2547580 - 2547522
Alignment:
Q  64 tcgtctcaaaacagtttctgtccatcacaaaccgtctcc-gttttcggtcacaatctcc 121  Q
    ||||||| |||||||||||||||||||| |||||||||| ||| || ||||||||||||    
T  2547580 tcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctcc 2547522  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 5102079 - 5102231
Alignment:
Q  45 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgttt-tcggtcacaatctccgatgcaacaatccctttcctta 143  Q
    ||||||| |||||||||   |||||| ||||||||| |||| ||||| ||  |||| || || |||||||||||| | |||  ||| ||||||||| ||     
T  5102079 agtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatagtcttcgattctcggtcacaatcactgatcgaaccatccctttcattc 5102178  T
Q  144 atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctct 196  Q
     ||  || || ||||||||||||||| | |||||| |||| ||||||||||||    
T  5102179 ctctccttttcgaaaggttccctaacgtcacatcactcaacatcaccctctct 5102231  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 12124870 - 12124770
Alignment:
Q  66 gtctcaaaacagtttctgtccatcacaaaccgtctccg-ttttcggtcacaatctccgatgcaacaatccctttccttaatcgtctctttgaaaggttcc 164  Q
    ||||| ||||| ||||| |||||||| ||||||||||  |||||  || ||||||| |||| |||||||||||||||| | || |||||  |||||||||    
T  12124870 gtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttccaaaggttcc 12124771  T
Q  165 c 165  Q
    |    
T  12124770 c 12124770  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 2472138 - 2472034
Alignment:
Q  66 gtctcaaaacagtttctgtccatcacaaaccgtctccgttt-tcggtcacaatctccgatgcaacaatccctttccttaatcgtctctttgaaaggttcc 164  Q
    ||||| ||||||||| | |||||||| || |||||| | || ||  ||||||||| |  || |||||||||||||||| |||  ||||| ||||||||||    
T  2472138 gtctccaaacagtttttctccatcaccaatcgtctctgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcc 2472039  T
Q  165 ctaac 169  Q
    |||||    
T  2472038 ctaac 2472034  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 41900257 - 41900294
Alignment:
Q  54 tctctctcactcgtctcaaaacagtttctgtccatcac 91  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  41900257 tctctctcactcgtctccaaacagtttctctccatcac 41900294  T

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