View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9073_high_4 (Length: 413)
Name: NF9073_high_4
Description: NF9073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9073_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 35061532 - 35061915
Alignment:
| Q |
11 |
gaacctgtggatgacaacccttcaatttctttatcgaacacatccctgtttgcaaggaaaacatgaaactcaatttcatgtcatcatataacagaacaga |
110 |
Q |
| |
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|||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061532 |
gaacgtgtggatgacaacccttccatttctttattgaacgcatccctgtttgcaaggaaaacatgaaactcaatttcatgtcatcatataacagaacaga |
35061631 |
T |
|
| Q |
111 |
caagaatcaagatgtactcactcatttggcttcaaaacagctactgaaccattttgtagagcataggaaccttgtggatttaccatcagcatagatctag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061632 |
caagaatcaagatgtactcactcatttggcttcaaaacagctactgaaccattttgtagagcataggaaccttgtggatttaccatcagcatagatctag |
35061731 |
T |
|
| Q |
211 |
gaataccagtaggttgcctgagttttttgatgtcagaagttgcatcaccatttgtagggcaatgctgaatgaaatgtccttaacaaatgtaagaagagac |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35061732 |
gaataccagtaggttgcctgagttttttgatgtcaaaagttgcatcaccatttgtagggcaatgctgaatgaaatgtccttaacaaatgtaacaagagac |
35061831 |
T |
|
| Q |
311 |
aagttagccaaattaactgacacaggtaaccagcattctataaacaaaacgggttataaagttgagaaatatgagcataccaga |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061832 |
aagttagccaaattaactgacacaggtaaccagcattctataaacaaaacgggttataaagttgagaaatatgagcataccaga |
35061915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 43022868 - 43023244
Alignment:
| Q |
18 |
tggatgacaacccttcaatttctttatcgaacacatccctgtttgcaaggaaaacatgaaactcaatttcatgtcatcatataacagaacagacaagaat |
117 |
Q |
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|||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43022868 |
tggatgacaacccttccatttctttatcaaacgcagccctgtttgcaaggaaaacatgaaactcaatttcatgtcatcatataacagaacagacaagaat |
43022967 |
T |
|
| Q |
118 |
caagatgtactcactcatttggcttcaaaacagctactgaaccattttgtagagcataggaaccttgtggatttaccatcagcatagatctaggaatacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43022968 |
caagatgtactcactcatttggcttcaaaacagctactgaaccattttgtagagcataggaaccttgtggatttaccatcagcatggatctaggaatacc |
43023067 |
T |
|
| Q |
218 |
agtaggttgcctgagttttttgatgtcagaagttgcatcaccatttgtagggcaatgctgaatgaaatgtccttaacaaatgtaagaagagacaagttag |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43023068 |
agtaggttgcctgagttttttgatgtcaaaagttgcatcaccatttgtagggcaatgctgaatgaaatgtccttaacaaatgtaacaagagacaagttag |
43023167 |
T |
|
| Q |
318 |
ccaaattaactgacacaggtaaccagcattctataaacaaaacgggttataaagttgagaaatatgagcataccaga |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
43023168 |
ccaaattaactgacacaggtaaccagcattctataaacagaacgggttatgaagttgagaaatatgagcataccaga |
43023244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 42812483 - 42812866
Alignment:
| Q |
11 |
gaacctgtggatgacaacccttcaatttctttatcgaacacatccctgtttgcaaggaaaacatgaaactcaatttcatgtcatcatataacagaacaga |
110 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42812483 |
gaacgtgtagatgacaacccttccatttctttatcgaacgcagccctgtttgcaaggaaaacatgaaactcaatttcatgtcatcatataacagaacaga |
42812582 |
T |
|
| Q |
111 |
caagaatcaagatgtactcactcatttggcttcaaaacagctactgaaccattttgtagagcataggaaccttgtggatttaccatcagcatagatctag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42812583 |
caagaatcaagatgtactcactcatttggcttcaaaacagctactgaaccattttgtagagcataggaaccttgtggatttaccatcagcatagatctag |
42812682 |
T |
|
| Q |
211 |
gaataccagtaggttgcctgagttttttgatgtcagaagttgcatcaccatttgtagggcaatgctgaatgaaatgtccttaacaaatgtaagaagagac |
310 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
42812683 |
gaataccagtaggctgcctgacttttttgatgtcaaaagtggaatcaccatttgtagggcaatgctgaatgaaatgtccttaacagatgtaacaagagac |
42812782 |
T |
|
| Q |
311 |
aagttagccaaattaactgacacaggtaaccagcattctataaacaaaacgggttataaagttgagaaatatgagcataccaga |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||||||||||||| ||||||||| |
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|
| T |
42812783 |
aagttagccaaattaactgacacaggtaaccagcattttgcaaacagaatgggttataaagttgagaaatatgaacataccaga |
42812866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 41564949 - 41564667
Alignment:
| Q |
28 |
cccttcaatttctttatcgaacacatccctgtttgcaaggaaaacatgaaactcaatttcatgtcatcatataacagaacagac---aagaatcaagatg |
124 |
Q |
| |
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|||||| |||||||| || || || |||||||| || ||||||||||||||||| |||||||| |||||||||||| ||| |||||||||||| |
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| T |
41564949 |
cccttccatttctttctcaaaagcagccctgttttaaaagaaaacatgaaactcaacttcatgtctacatataacagaatggacgagaagaatcaagata |
41564850 |
T |
|
| Q |
125 |
tactcactcatttggcttcaaaacagctactgaaccattttgtagagcataggaaccttgtggatttaccatcagcatagatctaggaataccagtaggt |
224 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41564849 |
tactcactcatttggcttcaaaacagctaccgaaccatttggcaaagcataggaaccttgtggatttaccatcagcatagatctaggaataccagtaggt |
41564750 |
T |
|
| Q |
225 |
tgcctgagttttttgatgtcagaagttgcatcaccatttgtagggcaatgctgaatgaaatgtccttaacaaatgtaagaaga |
307 |
Q |
| |
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||| ||| | | |||| |||| || ||| |||||||||||| ||||| |||||||||||||||||| |||||| || |||||| |
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| T |
41564749 |
tgcttgactctcttgacgtcataatttggatcaccatttgtggggcagtgctgaatgaaatgtcctaaacaaaagtgagaaga |
41564667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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