View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9073_high_5 (Length: 343)
Name: NF9073_high_5
Description: NF9073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9073_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 25 - 325
Target Start/End: Complemental strand, 2834764 - 2834464
Alignment:
| Q |
25 |
gtagttgtgtggaagatcaacctgcacaaactctgggcacataaaatacaaatcaccaaccatgccaccttcaatgtgtgcatcggcaattccaaaacaa |
124 |
Q |
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| T |
2834764 |
gtagttgtgtggaagatcaacctgcacaaactccgggcacataaaatacaaatcaccaaccatgccaccttcaatgtgtgcatcggcaattccaaaacaa |
2834665 |
T |
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| Q |
125 |
gcaactagcacgcatataccaatgtaaggtccaattccacctcgccctgatgttactaaatccaactgtcacaacacaaaaagattgcgaaagctactta |
224 |
Q |
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| T |
2834664 |
gcaactagcacgcatataccaatgtaaggtccaattccacctcgccctgatgttgctaaatccaactgtcacaacacaaaaagattgcgaaagctactta |
2834565 |
T |
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| Q |
225 |
ataagctaagggaaatcggttatatgcataaaaatcagatactgcaaattagattataggattggaaaatgatttgcttacaataagaaccaagaaagtg |
324 |
Q |
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| T |
2834564 |
ataagctaagggaaatcggttatatgcataaaaatcagatactgcaaattagattataggattggaaaatgatttgcttacaataagaaccaagaaagtg |
2834465 |
T |
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| Q |
325 |
g |
325 |
Q |
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| T |
2834464 |
g |
2834464 |
T |
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