View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9073_high_7 (Length: 232)
Name: NF9073_high_7
Description: NF9073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9073_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 14466776 - 14466882
Alignment:
| Q |
1 |
aaagcataagaatactcatgagataaaaaacttataagaaagcatgttatttgataaaccatagatgaaatgtgtacacattagtcctatttatagaacc |
100 |
Q |
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| T |
14466776 |
aaagcataagaatactcatgaaataaaaaacttataagaaagcatgttatttgataaaccatagatgaaatgtgtacacattagtcctatttatagaacc |
14466875 |
T |
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| Q |
101 |
caactac |
107 |
Q |
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||||||| |
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| T |
14466876 |
caactac |
14466882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 14466937 - 14466978
Alignment:
| Q |
174 |
aagattatattttatcattatcttaacaaataacatgaaaat |
215 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
14466937 |
aagattatattttatcattatcataagaaataacatgaaaat |
14466978 |
T |
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