View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9073_low_14 (Length: 285)
Name: NF9073_low_14
Description: NF9073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9073_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 8723587 - 8723318
Alignment:
| Q |
9 |
gggatttgtttgtttgttttatatatttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcata |
108 |
Q |
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| T |
8723587 |
gggatttgtttgtttgttttatatatttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcatt |
8723488 |
T |
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| Q |
109 |
accaagcaacttatttctaaggtagtggttaactagctcttcacctgttggacaaaatctgaatccaacataatgaagaatgggaggaaatgagggtgtc |
208 |
Q |
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| T |
8723487 |
accaagcaacttatttctaaggtagtgattaactagctcttcacctgttggacaaaatctgaatccaacataatgaagaatgggaggaaatgagggtgtc |
8723388 |
T |
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| Q |
209 |
atttgtctgctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctctgctt |
278 |
Q |
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| T |
8723387 |
atttgtctgctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctcggctt |
8723318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 34 - 273
Target Start/End: Complemental strand, 8740216 - 8739973
Alignment:
| Q |
34 |
tttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtag |
133 |
Q |
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| T |
8740216 |
tttacctggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaggtatcttatttttaaggtag |
8740117 |
T |
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| Q |
134 |
t-ggttaactagctcttcacctgttggacaaaatctgaatcc---aacataatgaagaatgggaggaaatgagggtgtcatttgtctgctaggctcccct |
229 |
Q |
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| T |
8740116 |
tacattaacaagctcttcatctgtaggacagaatctaagtccaagaacaaaatcaatagttggaggaaaagaggttgtcatttgtctggaagactcccct |
8740017 |
T |
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| Q |
230 |
tcatcacacatcattgtatcattttcctcttcgccttttatctc |
273 |
Q |
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| T |
8740016 |
tcatcacacaccattgtataattttcctcttcaccttttttctc |
8739973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 8690867 - 8690724
Alignment:
| Q |
35 |
ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagt |
134 |
Q |
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| T |
8690867 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagt |
8690768 |
T |
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| Q |
135 |
ggttaactagctcttcacctgttggacaaaatctgaatccaaca |
178 |
Q |
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| T |
8690767 |
ggtttacaagctcttcatctgttggtcggaatctgaatccaaca |
8690724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 8705140 - 8704996
Alignment:
| Q |
34 |
tttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtag |
133 |
Q |
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| T |
8705140 |
tttacctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtaacttttttttgagatag |
8705041 |
T |
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| Q |
134 |
tggttaactagctcttcacctgttggacaaaatctgaatccaaca |
178 |
Q |
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| T |
8705040 |
tggtttacaagctcttcatctgttggtcggaatctgaatccaaca |
8704996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 8722220 - 8722073
Alignment:
| Q |
31 |
atatttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaagg |
130 |
Q |
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| T |
8722220 |
atatttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgaga |
8722121 |
T |
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| Q |
131 |
tagtggttaactagctcttcacctgttggacaaaatctgaatccaaca |
178 |
Q |
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| T |
8722120 |
tagtagtttacaagctcttgatctgttggatggaatctgaatccaaca |
8722073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 8691387 - 8691327
Alignment:
| Q |
218 |
ctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctctgctt |
278 |
Q |
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| T |
8691387 |
ctaggctccccttcatcacatatcattctatcaatttcctcttcagcttttttctcagctt |
8691327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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