View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9073_low_5 (Length: 510)
Name: NF9073_low_5
Description: NF9073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9073_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Complemental strand, 15222269 - 15221798
Alignment:
| Q |
19 |
ccaaaatgactatttactcttttctannnnnnnnnagggacaataggttgaaacacttaagaccccgatagtaatgacaacatatttcattaaaagttag |
118 |
Q |
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| T |
15222269 |
ccaaaatgactatttactcttttctatttttctt-agggacaataggttgaaacacttaagaccccgatagtaatgacaacatattttattaaaagttag |
15222171 |
T |
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| Q |
119 |
ggtgacattggaatacatgaaatcatttatcaagtcttgaggaaacagatgcatcccaatatatagtagaaatacaacatctaggtttacctaattcata |
218 |
Q |
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| T |
15222170 |
ggtgacattggaatacatgaaatcatttatcaagtcttgaggaaacatatgcatcccaatatatagtagaaatacaacatctaggtttacctaattcata |
15222071 |
T |
|
| Q |
219 |
atccatggataacttatccacctatattgtctaaaattgcaacatatatgtcatgacctaatttatctctacctcccccaatagggttgacaaagcgagg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
15222070 |
atccatggataacttatccacctatattgtctaaaattgcaacatatatgtcatgacctaatttatctctacctcctccaatggggttgacaaagcgagg |
15221971 |
T |
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| Q |
319 |
gtagccataacttacagtagtgaacagccatgattgttcatccacttcaccaatataatactctgattgttgaagaagctcattgaagacacggtggtga |
418 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
15221970 |
gtagccataacttacggtagtgaacagccatgattgttaatccacttcaccaatataatactctgatggttgaagaagctcactgaagacacggtggtga |
15221871 |
T |
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| Q |
419 |
gacgaaccaagagcttccatggacccccctcaacgcggatacaactgaaacccatggatatatgccaatgtatag |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15221870 |
gacgaaccaagagcttccatggacccccctcaacgcggatacaactgaaacccatgg--atatgccaatgtatag |
15221798 |
T |
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