View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9073_low_7 (Length: 422)
Name: NF9073_low_7
Description: NF9073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9073_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 15402299 - 15401909
Alignment:
| Q |
19 |
catcatttatcatatctatccaatttattaatctctagacctttcttatatagttttctaagtcttcctgtacctcgagcgatttgactactaacctcca |
118 |
Q |
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| T |
15402299 |
catcatttatcatatctatccaatttattaatctctagacctttcttatatagttttctaagtcttcctgtacctcgagcgatttgactactaacctccg |
15402200 |
T |
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| Q |
119 |
tctgatctccactccaaaatcaaatactcctagagtttagagtaaattactaaaaaacaataacaaagtaaattgtattaataaaggtgtcagaccaggt |
218 |
Q |
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| T |
15402199 |
tctgatctccactccaaaatcaaatagtcctagagtttagagtaaattactaaaaaacaataacaaagtaaattgtattaataaaggtgtcagaccaggt |
15402100 |
T |
|
| Q |
219 |
tttgataaaagagaattcattgcaaattgcaatgtgaatacgattgagtctgcgtcagctgcatttgatcgtgattctcctcaatgtcaagaaccgtcac |
318 |
Q |
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| T |
15402099 |
tttgataaaagagaattcattgcaaattgcaatgtgaatacgattgagtctgcgtcagctgcatttgatcgtgattctcctcaatgtcaagaaccgtcac |
15402000 |
T |
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| Q |
319 |
atgacttccaccaatttaaaaccttggtgctaagtgttcattattcataaaacttgcgtgttacattttcttggaaggcgcctcaacacca |
409 |
Q |
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| T |
15401999 |
atgacttccaccaatttaaaaccttggtgctaagtgttcattattcataaaacttgcgtgttacattttcttggaaggcgcctcaacacca |
15401909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 15400584 - 15400412
Alignment:
| Q |
20 |
atcatttatcatatctatccaatttattaatctctagacctttcttatatagttttctaagtcttcctgtacctcgagcgatttgactactaacctccat |
119 |
Q |
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| T |
15400584 |
atcatatatcacatctatcaaatttattaatctctaaaccctttttata--gttttttaagtcttcatctacctcgagcgatttgactgctaacctccat |
15400487 |
T |
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| Q |
120 |
ctgatctccactccaaaatcaaatactcctagagtttagagtaaattactaa--aaaacaataacaaagtaaattgtatta |
198 |
Q |
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| T |
15400486 |
ctaatctccgctcgaaaatcacatactc------tttatagtaaattactaaagaaaacaataacaaagtaaattttatta |
15400412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 15400169 - 15400123
Alignment:
| Q |
212 |
accaggttttgataaaagagaattcattgcaaattgcaatgtgaata |
258 |
Q |
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| T |
15400169 |
accaggttttaataagagatatttcattgcaaattgcaatgtgaata |
15400123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 47147583 - 47147537
Alignment:
| Q |
20 |
atcatttatcatatctatccaatttattaatctctagacctttctta |
66 |
Q |
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| T |
47147583 |
atcatatatcatatctatccaactcattaatctctagatctttctta |
47147537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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