View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9074_low_10 (Length: 428)

Name: NF9074_low_10
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9074_low_10
NF9074_low_10
[»] chr6 (27 HSPs)
chr6 (1-404)||(4579140-4579543)
chr6 (1-279)||(4574141-4574419)
chr6 (1-196)||(4560422-4560617)
chr6 (1-222)||(4598061-4598282)
chr6 (1-117)||(4585631-4585747)
chr6 (1-121)||(4613739-4613859)
chr6 (13-130)||(4557107-4557224)
chr6 (3-115)||(4563708-4563820)
chr6 (1-123)||(4592220-4592342)
chr6 (21-126)||(4570958-4571063)
chr6 (4-112)||(4480693-4480801)
chr6 (1-112)||(4516321-4516432)
chr6 (1-102)||(4504418-4504519)
chr6 (1-109)||(3171744-3171852)
chr6 (34-130)||(4606945-4607041)
chr6 (4-112)||(4617022-4617130)
chr6 (1-112)||(4461123-4461234)
chr6 (1-93)||(4490376-4490468)
chr6 (36-112)||(4505857-4505933)
chr6 (17-112)||(4492955-4493050)
chr6 (17-112)||(4515158-4515253)
chr6 (6-108)||(4392052-4392154)
chr6 (17-102)||(4469813-4469898)
chr6 (1-112)||(4601789-4601900)
chr6 (17-109)||(4267203-4267295)
chr6 (22-93)||(4568072-4568143)
chr6 (1-109)||(4625954-4626062)
[»] chr8 (3 HSPs)
chr8 (1-128)||(20863864-20863991)
chr8 (28-130)||(16686315-16686417)
chr8 (1-112)||(1674226-1674337)
[»] scaffold0477 (1 HSPs)
scaffold0477 (1-109)||(4707-4815)
[»] chr5 (2 HSPs)
chr5 (1-112)||(28000120-28000231)
chr5 (17-109)||(24103002-24103094)
[»] chr3 (1 HSPs)
chr3 (6-112)||(1281114-1281220)
[»] scaffold0288 (1 HSPs)
scaffold0288 (1-109)||(3740-3848)
[»] chr7 (1 HSPs)
chr7 (59-102)||(3086430-3086473)


Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 4579543 - 4579140
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4579543 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgtta 4579444  T
Q  101 ctcaaacaaaatcaaacttaagtgacttttgtacaatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagtgtgg 200  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579443 ctcaaacaaaatcgaacttaagtgacttttgtacgatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagtgtgg 4579344  T
Q  201 atatcaacattttagtcaggaatatcgtaacaatgcattcaacttcatcaagttcattcttcataactaaagatcacattaatattatattcataaactt 300  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4579343 atatcaacattttagtcaggaacatcgtaacaatgcattcaacttcatcaagttcattcttcgtaactaaagatcacattaatattatattcataaactt 4579244  T
Q  301 ctcattgcttgtaagcttcttgcttcggagattgatttgaaaggttatatcctataacaataaaagacattcactaatattgagtactactatgcaatta 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  4579243 ctcattgcttgtaagcttcttgcttcggagattgatttgaaaggttctatcctataacaataaaagacattcacttatgttgagtactactatgcaatta 4579144  T
Q  401 tact 404  Q
    ||||    
T  4579143 tact 4579140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4574419 - 4574141
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    ||||||||| || |||||| |||||||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  4574419 gaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttg 4574320  T
Q  101 ctcaaacaaaatcaaacttaagtgacttttgtacaatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagtgtgg 200  Q
    || |||||||||||| ||||||| |||||| |||||| | |||||||||||| ||| |||||||||   |||||| |||| ||||||||||||||| ||     
T  4574319 cttaaacaaaatcaagcttaagtcacttttatacaatatatatagttttgttaggaacaaataattcatattttaggtcttcctatgttcttaagtatga 4574220  T
Q  201 atatcaacattttagtcaggaatatcgtaacaatgcattcaacttcatcaagttcattcttcataactaaagatcacat 279  Q
    | ||||||| ||||||||| || || ||||  ||||||||   ||||||||||||||||||||||| ||||||||||||    
T  4574219 acatcaacaatttagtcagaaacattgtaatgatgcattcttgttcatcaagttcattcttcataaataaagatcacat 4574141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4560617 - 4560422
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||| || ||| ||||||| |||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4560617 gaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttg 4560518  T
Q  101 ctcaaacaaaatcaaacttaagtgacttttgtacaatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagt 196  Q
    || |||||||||||||| ||||| |||||| |||||| | |||||||||||| ||| ||||| ||||| |||||| ||||  ||||||||||||||    
T  4560517 cttaaacaaaatcaaacataagttacttttatacaatatatatagttttgttaggaacaaatcatttgtattttaggtcttgctatgttcttaagt 4560422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4598282 - 4598061
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||| ||||||| ||||||| ||||| ||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||     
T  4598282 gaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgttt 4598183  T
Q  101 ctcaaacaaaatcaaacttaagtgacttttgtacaatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagtgtgg 200  Q
    || ||||| |||||||||||| | |||||  || ||| ||||||||||| || ||| ||||||||||  | ||| |||  |||||| |||| |||||||     
T  4598182 cttaaacagaatcaaacttaattaactttaataaaatatttatagttttattaggatcaaataatttttactttttgttaacctatattctaaagtgtga 4598083  T
Q  201 atatcaacattttagtcaggaa 222  Q
      ||||||||||||||||||||    
T  4598082 gcatcaacattttagtcaggaa 4598061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4585747 - 4585631
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||    
T  4585747 gaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttg 4585648  T
Q  101 ctcaaacaaaatcaaac 117  Q
    || ||| ||||||||||    
T  4585647 cttaaataaaatcaaac 4585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 4613739 - 4613859
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| || |||||| ||    
T  4613739 gaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctg 4613838  T
Q  101 ctcaaacaaaatcaaacttaa 121  Q
    || ||||||||||||||||||    
T  4613839 ctgaaacaaaatcaaacttaa 4613859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 4557224 - 4557107
Alignment:
Q  13 aattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 112  Q
    ||||||| |||||| ||||| ||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||    
T  4557224 aattgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaat 4557125  T
Q  113 caaacttaagtgactttt 130  Q
    ||||| ||||||||||||    
T  4557124 caaacctaagtgactttt 4557107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 4563820 - 4563708
Alignment:
Q  3 ggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgct 102  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||||||| |||||||| |||||||| |||||    
T  4563820 ggcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgct 4563721  T
Q  103 caaacaaaatcaa 115  Q
     ||||||||||||    
T  4563720 taaacaaaatcaa 4563708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4592342 - 4592220
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||| |||||||||| ||||||||||||||||  |||||| |||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||||    
T  4592342 gaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttg 4592243  T
Q  101 ctcaaacaaaatcaaacttaagt 123  Q
    || ||| ||||||||| ||||||    
T  4592242 cttaaataaaatcaaatttaagt 4592220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 4571063 - 4570958
Alignment:
Q  21 tgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaactta 120  Q
    |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| || ||    
T  4571063 tgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcacaccta 4570964  T
Q  121 agtgac 126  Q
    ||||||    
T  4570963 agtgac 4570958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 4480801 - 4480693
Alignment:
Q  4 gcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctc 103  Q
    ||||||||| || ||||||||||||| ||  ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||     
T  4480801 gcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgctt 4480702  T
Q  104 aaacaaaat 112  Q
    |||||||||    
T  4480701 aaacaaaat 4480693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 4516432 - 4516321
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||| || || |||||||||||||  ||||||||||| ||||| || || ||||||||  |||||||||| |||||||||||||||||| ||    
T  4516432 gaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctg 4516333  T
Q  101 ctcaaacaaaat 112  Q
    ||||||||||||    
T  4516332 ctcaaacaaaat 4516321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 4504418 - 4504519
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||| || ||||||||||||||||  ||||||||||| |||| ||| || |||||||||||||||||||| |||||||||||||| || |||    
T  4504418 gaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttg 4504517  T
Q  101 ct 102  Q
    ||    
T  4504518 ct 4504519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 3171852 - 3171744
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||| ||| || ||||||||||||||||  |||||||| || |||  ||| || |||||||||||||||||||| ||||||||||||||||| |||    
T  3171852 gaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttg 3171753  T
Q  101 ctcaaacaa 109  Q
    || ||||||    
T  3171752 cttaaacaa 3171744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 4606945 - 4607041
Alignment:
Q  34 ggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgactttt 130  Q
    ||||| ||||| |||||| || || | |||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||| ||||||||||||    
T  4606945 ggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgactttt 4607041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 4617130 - 4617022
Alignment:
Q  4 gcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctc 103  Q
    ||||||||| || ||||||||||||||||  |||||| |||| ||||| || || |||||||||||||||||| | ||||| |||||||| ||||||||     
T  4617130 gcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgctt 4617031  T
Q  104 aaacaaaat 112  Q
    |||||||||    
T  4617030 aaacaaaat 4617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 4461234 - 4461123
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||  || || || |||||||||||||||||||| || |||||||||||   |||||||| ||||||||| ||||| |||||||| || |||    
T  4461234 gaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttg 4461135  T
Q  101 ctcaaacaaaat 112  Q
    || |||||||||    
T  4461134 cttaaacaaaat 4461123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4490376 - 4490468
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaagga 93  Q
    |||||||||||| |  ||||||||||||||||  | ||||||||||||||  || ||  ||||||||||||||||||| ||||||||||||||    
T  4490376 gaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaagga 4490468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 4505933 - 4505857
Alignment:
Q  36 aggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 112  Q
    ||||||| || |||||||| || ||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||    
T  4505933 aggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 4493050 - 4492955
Alignment:
Q  17 gagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 112  Q
    |||||||| |||||||  |||||||||||   |||||| || |||||||||||||||||||| |||||||| ||||| || ||||| |||||||||    
T  4493050 gagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 4515158 - 4515253
Alignment:
Q  17 gagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 112  Q
    |||||||| |||||||  || |||||||| |||| ||| || | ||||||| |||||||||| |||||||| |||||||||||||| |||||||||    
T  4515158 gagttgaaaaagaaggcagacgaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaat 4515253  T

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Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 4392052 - 4392154
Alignment:
Q  6 aaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaa 105  Q
    ||||||| || ||||||||||||||||   ||||||||||  ||||||| || | ||||| |||||||||||| ||| ||||||||||||| ||||| ||    
T  4392052 aaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaa 4392151  T
Q  106 aca 108  Q
    |||    
T  4392152 aca 4392154  T

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Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 4469898 - 4469813
Alignment:
Q  17 gagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgct 102  Q
    ||||| |||||||||||||||||||| || |||||||||||   |||||||| ||||||||| ||||| |||||||| || |||||    
T  4469898 gagttcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgct 4469813  T

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Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 4601900 - 4601789
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||| || ||||||||||||| ||   |||||  ||| ||||  || || |||||||||| |||| |||| ||||| |||||||||||||||    
T  4601900 gaggcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttg 4601801  T
Q  101 ctcaaacaaaat 112  Q
    || |||||||||    
T  4601800 cttaaacaaaat 4601789  T

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Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 4267203 - 4267295
Alignment:
Q  17 gagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaa 109  Q
    |||||||||| |||||  || ||| |||| |||||||| || | |||||||||||||||||| ||||| |||||||||||  |||| ||||||    
T  4267203 gagttgaagaggaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 4267295  T

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Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 4568143 - 4568072
Alignment:
Q  22 gaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaagga 93  Q
    |||||||||||  ||| ||||||| |||||||| |  | |||||||||||||||||| ||||||||||||||    
T  4568143 gaagaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

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Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4626062 - 4625954
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||| || ||||||||||||||||  |||||| |||  || || || || ||||||||||||||  |||| ||| ||||||| || || |||    
T  4626062 gaggcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttg 4625963  T
Q  101 ctcaaacaa 109  Q
    || ||||||    
T  4625962 cttaaacaa 4625954  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 20863864 - 20863991
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||| ||| |||||||||||||||||  ||||||||||| ||||| | |||  ||||||| ||||||||||| |||||||||||||||||||||    
T  20863864 gaggcaaaagacaaatgagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttg 20863963  T
Q  101 ctcaaacaaaatcaaacttaagtgactt 128  Q
    || |||||||||||||||||||||||||    
T  20863964 cttaaacaaaatcaaacttaagtgactt 20863991  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 16686315 - 16686417
Alignment:
Q  28 gaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgact 127  Q
    ||||||||| || ||| |||||||||| || |||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||| |||||||||    
T  16686315 gaaggtggacgaagacccgagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgact 16686414  T
Q  128 ttt 130  Q
    |||    
T  16686415 ttt 16686417  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1674337 - 1674226
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||| || || |||||||||||||  |||||| |||| ||||| || || |||||||||||||||||||| |||||||||||||| ||||||    
T  1674337 gaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttg 1674238  T
Q  101 ctcaaacaaaat 112  Q
    || |||||||||    
T  1674237 cttaaacaaaat 1674226  T

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Target: scaffold0477 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4707 - 4815
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||| || ||||||||||||||||  |||||| |||| ||  |||| ||||||||||||||||||||||| |||||||||||||||||  ||    
T  4707 gaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatg 4806  T
Q  101 ctcaaacaa 109  Q
    || ||||||    
T  4807 cttaaacaa 4815  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 28000120 - 28000231
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    |||||||||||| || ||||||||||| ||||  |||||| |||| ||||| || || |||||||||||||||||||| |||||||||||||| ||||||    
T  28000120 gaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttg 28000219  T
Q  101 ctcaaacaaaat 112  Q
     | |||||||||    
T  28000220 tttaaacaaaat 28000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 24103094 - 24103002
Alignment:
Q  17 gagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaa 109  Q
    ||||| ||||||||||  || ||| |||| ||| |||| || | |||||||||||||||||| ||||| |||||||||||  |||| ||||||    
T  24103094 gagttcaagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 24103002  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 1281220 - 1281114
Alignment:
Q  6 aaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaa 105  Q
    ||||||| || || |||||||||  || ||||||| |||| ||||| || || ||||||||||||||||| || ||||||||||||||  ||||||| ||    
T  1281220 aaaaggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaa 1281121  T
Q  106 acaaaat 112  Q
    |||||||    
T  1281120 acaaaat 1281114  T

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Target: scaffold0288 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 3740 - 3848
Alignment:
Q  1 gaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttg 100  Q
    ||||||||||||  | ||||| ||||||||||  |||||| |||| ||||| || ||  |||||||||||||| |||| ||||| ||||||||||| |||    
T  3740 gaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttg 3839  T
Q  101 ctcaaacaa 109  Q
    || ||||||    
T  3840 cttaaacaa 3848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 3086473 - 3086430
Alignment:
Q  59 tgttcatacatgaacttggagaaagtgattaaggaggtgttgct 102  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||    
T  3086473 tgttcatacatgaacttggacaaagttattaaggaggtcttgct 3086430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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