View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9074_low_16 (Length: 399)
Name: NF9074_low_16
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 32021264 - 32021397
Alignment:
| Q |
1 |
caaagaagaactcgtcggagcaaaagcaaagcaaaactttccggcagaatccaccgcaatcaagtaattcttcgccggcaaactccaaaccttattctca |
100 |
Q |
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| T |
32021264 |
caaagaagaactcgtcggagcaaaagcaaagcaaaactttccggcagaatccaccgcaatcaagtaattcttcgccggcaaactccaaaccttattctca |
32021363 |
T |
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| Q |
101 |
ccaaaatgaaaagccacagttggaaccctaacac |
134 |
Q |
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| T |
32021364 |
ccaaaatgaaaagccacagttggaaccctaacac |
32021397 |
T |
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Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 129 - 387
Target Start/End: Complemental strand, 32022765 - 32022530
Alignment:
| Q |
129 |
taacaccttcatctaccaaccaac-aactcaacagatccaatcacttnnnnnnnnnnnnnnnnnatttttcaaaccaataaatcaagcactcaactccac |
227 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32022765 |
taacaccttcatctaccaaccaacaaactcaacagatccaatcactt--------tctctctctatttttcaaaccaataaatcaagcactcaactccac |
32022674 |
T |
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| Q |
228 |
actccctcactcactttactttcctaataacccnnnnnnnntggcttccaaaaaagcacttctatatttcaacttatcacttctcattgcaacaatctct |
327 |
Q |
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||||||||||||| | || || || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
32022673 |
actccctcactca------taaccaaaaaa----------atggcttccaaaaaagcacttctatacttcaacttatcacttctcattacaacaatctct |
32022590 |
T |
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| Q |
328 |
cttcttccatttccaacttcctcatctcgcatcattacttcacacacctcctttcttgat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32022589 |
cttcttccatttccaacttcctcatctcgcatcattacttcacacacctcccttcttgat |
32022530 |
T |
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