View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9074_low_18 (Length: 372)
Name: NF9074_low_18
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 21933167 - 21933300
Alignment:
| Q |
30 |
gaaacaaagtaccttgtgaataacaggaggaagagaaactgttcttctgcaaaaagtatcatcatcatgttcatgatcctcagtgacatgtttattttct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21933167 |
gaaacaaagtaccttgtgaataacaggaggaagagaaactgttcttctgcaagaagtatcatcatcatgttcatgatcctcagtgacatgtttattttct |
21933266 |
T |
|
| Q |
130 |
tcagaactcattttgctataatttgcaaaagaat |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
21933267 |
tcagaactcattttgctataatttgcaaaagaat |
21933300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 21933378 - 21933495
Alignment:
| Q |
241 |
ccaatgatagccataccacttagttaatagttattggctagtggatggtatggta---gtagtaataataataatgaaagagacaagaatgtgattaaga |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21933378 |
ccaatgatagccataccacttagttaatagttattggctagtggatggtatggtattggtagtaataataataatgaaagagacaagaatgtgattaaga |
21933477 |
T |
|
| Q |
338 |
tttaagcacacaaaccaa |
355 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21933478 |
tttaagcacacaaaccaa |
21933495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University