View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9074_low_2 (Length: 910)

Name: NF9074_low_2
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9074_low_2
NF9074_low_2
[»] chr1 (9 HSPs)
chr1 (20-868)||(27428391-27429240)
chr1 (332-792)||(27407894-27408346)
chr1 (20-333)||(27408501-27408829)
chr1 (647-813)||(27241907-27242073)
chr1 (661-810)||(27291008-27291157)
chr1 (847-901)||(27428338-27428392)
chr1 (215-293)||(27241536-27241614)
chr1 (215-296)||(27290811-27290892)
chr1 (215-291)||(27272931-27273007)
[»] scaffold0417 (2 HSPs)
scaffold0417 (647-810)||(6679-6842)
scaffold0417 (215-279)||(6374-6438)
[»] chr3 (4 HSPs)
chr3 (647-812)||(13360273-13360438)
chr3 (690-812)||(13294937-13295059)
chr3 (215-274)||(13294417-13294476)
chr3 (215-294)||(13360839-13360918)


Alignment Details
Target: chr1 (Bit Score: 751; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 20 - 868
Target Start/End: Complemental strand, 27429240 - 27428391
Alignment:
Q  20 gtccgtaaagagaaaatgccgtcagtaataagatataaatccagccaaatgataaacaattattcttaatttaattagaaccaataaactcagaagtgta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27429240 gtccgtaaagagaaaatgccgtcagtaataagatataaatccagccaaatgataaacaattattcttaatttaattagaaccaataaactcagaagtgta 27429141  T
Q  120 aatgcaagctatgaaaatgtctaatgtgaagaattttccctattataaatcatgcgccgaccaatcattacacatgnnnnnnnnncagctagcctaataa 219  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||         |||||||||||||||    
T  27429140 aatgcaagctatgaaaatgtctaatgtgaagaattctccatattctaaatcatgcgccgaccaatcattacacatgaaaaaaaaacagctagcctaataa 27429041  T
Q  220 cggtgtatgagttgtttgtatgcatccgtgttctccaagtaatgatcaatttcagcctggtatcataagtcacattaagaatcaaaatcagtggcttgga 319  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27429040 cggtgtatgagttgtttgtatgcatccttgttctccaagtaatgatcaatttcagcctggtatcataagtcacattaagaatcaaaatcagtggcttgga 27428941  T
Q  320 tgagagaatcacattaagcatttattatatatctgcatatgtatcaattatttttatatgtataggaacgaagattttatgcagccaacaaagaaatcag 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  27428940 tgagagaatcacattaagcatttattatatatctgcatatgtatcaattatttttatatgtataggaacaaagattttatgcagccaaccaagaaatcag 27428841  T
Q  420 attccttagacgcggtagtaacacgcgatcattatccttggatgaggatcagacgactcgtgttccgacttcactatgttgtcttaaaatacaacttaaa 519  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27428840 attccttagacgcagtagaaacacgcgatcattatccttggatgaggatcagacgactcgtgttccgacttcactatgttgtcttaaaatacaacttaaa 27428741  T
Q  520 atgagttgtccgatctttcatcctacgacgtagattggctactgcgtgaaagtacccaaaaagctatccaagtgttgaaaagcttttcattggaattgta 619  Q
    ||||||||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27428740 atgagttgtccgatctttcatactacgaccgagatttgctactgcgtgaaagtacccaaaaagctatccaagtgttgaaaagcttttcattggaattgta 27428641  T
Q  620 aatttaaaagcatccaagtcaaacacataccttccgaattgcttttatggcagtgagcaaattatcaccaataaattcctcaaggaattcggccttgtga 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27428640 aatttaaaagcatccaagtcaaacacataccttccgaattgcttttatggcagtgagcaaattatcaccaataaattcctcaaggaagtcggccttgtga 27428541  T
Q  720 agagcttccaaagattctgaaagtgattttggcaatctctgaaggttgtttggatttggatctgtatctgtttgatacatgaaataagaagttaatatga 819  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27428540 agagcttccaaagattctgaaagtgattttggcaatctctgaaggttgtttggatttggatctgtatctgtttgatacatgaaataagaagtgaatatga 27428441  T
Q  820 acc-aaaataaatttgcttattgtttgaaaatcaaataagaagtaaacaa 868  Q
    ||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  27428440 accaaaaataaaattgctaattgtttgaaaatcaaataagaagtaaacaa 27428391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 332 - 792
Target Start/End: Complemental strand, 27408346 - 27407894
Alignment:
Q  332 attaagcatttattatatatctgcatatgtatcaattatttttatatgtataggaacgaagattttatgcagccaacaaagaaatcagattccttagacg 431  Q
    ||||||||||||||||||  ||||||||||||||  || |||| || |||  ||||   |||||||||||||| ||| ||||||||||||||  || | |    
T  27408346 attaagcatttattatatcactgcatatgtatcagctaattttttaggta--ggaattcagattttatgcagcaaaccaagaaatcagattctctacagg 27408249  T
Q  432 cggtagtaacacgcgatcattatccttggatgaggatcagacgactcgtgttccgacttcactatgttgtcttaaaatacaacttaaaatgagttgtccg 531  Q
    | |||| ||||||||||||| ||| |||||||| ||||||| || |||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||    
T  27408248 cagtagaaacacgcgatcataatcgttggatgatgatcagatgagtcgtattctgacttaactatgttgtcttaaa-tacaacttaaaatgagttgtccg 27408150  T
Q  532 atctttcatcctacgacgtagattggctactgcgtgaaagtacccaaaaagctatccaagtgttgaaaagcttttcattggaattgtaaatttaaaagca 631  Q
    |||||||||||||||||  || || |||||||||||||||  |||||||| ||||||||||  | ||||||||||||| ||  || || |||||||||||    
T  27408149 atctttcatcctacgactgaggtttgctactgcgtgaaaggccccaaaaaactatccaagtactaaaaagcttttcatagg--ttatagatttaaaagca 27408052  T
Q  632 tccaagtcaaacacataccttccgaattgcttttatggcagtgagcaaattatcaccaataaattcctcaaggaattcggccttgtgaagagcttccaaa 731  Q
    || |||||||   |||||||| |||||||||||||||  ||| ||||| |||||||| |||||||||||||| || |||||||| || |||||||| |||    
T  27408051 tctaagtcaa---catacctttcgaattgcttttatgcaagtcagcaacttatcaccgataaattcctcaagaaagtcggccttatggagagcttctaaa 27407955  T
Q  732 gattctgaaagtgattttggcaatctctgaaggttgtttggatttggatctgtatctgttt 792  Q
    ||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  27407954 gattcagaaagtgatattggcaatctctgaaggttttctggatttggatctgtatctgttt 27407894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 27408829 - 27408501
Alignment:
Q  20 gtccgtaaagagaaaatgccgtcagtaataagatataaatccagccaaatgataaacaattattcttaatttaattagaaccaataaactcagaagtgta 119  Q
    |||||||||||||||||| | |||| ||||||||| || || |||||||||| | ||||||||||||||||| |||||||| | |||||||| |||||||    
T  27408829 gtccgtaaagagaaaatgtcatcagcaataagatacaactcaagccaaatgagatacaattattcttaattttattagaactattaaactcaaaagtgta 27408730  T
Q  120 aatgcaagctatgaaaatgtctaatgtgaagaattttccctattataaatcatgcgccgaccaatcattac-------acatgnnnnnnnnn------ca 206  Q
    | |||||||||||||||| ||||||||||| |||| ||| || | ||||| |||||| ||||| |||||||       |||||               ||    
T  27408729 a-tgcaagctatgaaaatttctaatgtgaaaaattctccataatctaaataatgcgctgaccagtcattactcattacacatgaagaaaaaaaaaagaca 27408631  T
Q  207 gctagcctaataacggtgtatgagttgtttgtatgcatccgtgttctccaagtaatgatcaatttcagcctgg---tatcataagtcacattaagaatca 303  Q
    |||||||||||||||||||||||| || |||||||| ||| |||||||| |||||||||||||||||||||||    |||||||||||||||||||||||    
T  27408630 gctagcctaataacggtgtatgagctgcttgtatgcttccttgttctccgagtaatgatcaatttcagcctggcatcatcataagtcacattaagaatca 27408531  T
Q  304 aaatcagtggcttggatgagagaatcacat 333  Q
    |||||||| |||||| ||||||||||||||    
T  27408530 aaatcagtagcttggttgagagaatcacat 27408501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 647 - 813
Target Start/End: Original strand, 27241907 - 27242073
Alignment:
Q  647 taccttccgaattgcttttatggcagtgagcaaattatcaccaataaattcctcaaggaattcggccttgtgaagagcttccaaagattctgaaagtgat 746  Q
    |||||| | |||||||||||||||||| ||||| ||||| |||||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||||    
T  27241907 tacctttccaattgcttttatggcagtcagcaacttatccccaataaactcctccaggaagtcagccttatggagagcttccaaagattctgaaagtgat 27242006  T
Q  747 tttggcaatctctgaaggttgtttggatttggatctgtatctgtttgatacatgaaataagaagtta 813  Q
    |||||||| ||| |||| || | | ||||||||  ||||||||||| ||||||||||| ||||||||    
T  27242007 tttggcaaactccgaagattttctagatttggacttgtatctgtttcatacatgaaattagaagtta 27242073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 661 - 810
Target Start/End: Original strand, 27291008 - 27291157
Alignment:
Q  661 cttttatggcagtgagcaaattatcaccaataaattcctcaaggaattcggccttgtgaagagcttccaaagattctgaaagtgattttggcaatctctg 760  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||| || ||||| || || ||||||||||| || |||||||||||||||||| ||||    
T  27291008 cttttatggcagtcagcaacttatcaccaataaattccttaaggaagtcagccttatgtagtgcttccaaagactccgaaagtgattttggcaatttctg 27291107  T
Q  761 aaggttgtttggatttggatctgtatctgtttgatacatgaaataagaag 810  Q
    ||| || | | ||||||||| |  |||||| | |||||| ||||| ||||    
T  27291108 aagattttctagatttggatttccatctgtataatacattaaatatgaag 27291157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 847 - 901
Target Start/End: Complemental strand, 27428392 - 27428338
Alignment:
Q  847 aaatcaaataagaagtaaacaagttctattcatgatgcatgttccatagtataat 901  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27428392 aaatcaaataagaagtaaacaagttctattcatgatgcatgttccatagtataat 27428338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 27241536 - 27241614
Alignment:
Q  215 aataacggtgtatgagttgtttgtatgcatccgtgttctccaagtaatgatcaatttcagcctggtatcataagtcaca 293  Q
    ||||||||| ||||||||| |||||||||||| |||||| | |||| |||||||||||||||||| |||| ||||||||    
T  27241536 aataacggtatatgagttgcttgtatgcatccttgttcttcgagtattgatcaatttcagcctggcatcacaagtcaca 27241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 27290811 - 27290892
Alignment:
Q  215 aataacggtgtatgagttgtttgtatgcatccgtgttctccaagtaatgatcaatttcagcctggtatcataagtcacatta 296  Q
    ||||||||||||||||||| |||||||||||| |||||| | |||| ||||||| |||||||| | |||| |||||||||||    
T  27290811 aataacggtgtatgagttgcttgtatgcatccttgttcttcgagtattgatcaacttcagccttgcatcacaagtcacatta 27290892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 27272931 - 27273007
Alignment:
Q  215 aataacggtgtatgagttgtttgtatgcatccgtgttctccaagtaatgatcaatttcagcctggtatcataagtca 291  Q
    ||||||||| ||||||||  |||||||||||| |||||| | |||| ||||||| |||||||||| |||| ||||||    
T  27272931 aataacggtatatgagtttcttgtatgcatccttgttcttcgagtattgatcaaattcagcctggcatcacaagtca 27273007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 647 - 810
Target Start/End: Original strand, 6679 - 6842
Alignment:
Q  647 taccttccgaattgcttttatggcagtgagcaaattatcaccaataaattcctcaaggaattcggccttgtgaagagcttccaaagattctgaaagtgat 746  Q
    |||||| ||||| || ||||||||||| ||||| || ||||||||||| ||||| || || || ||||| ||||||||||||||||||||||||||||||    
T  6679 tacctttcgaatcgcctttatggcagtcagcaacttgtcaccaataaactcctctagaaagtcagccttatgaagagcttccaaagattctgaaagtgat 6778  T
Q  747 tttggcaatctctgaaggttgtttggatttggatctgtatctgtttgatacatgaaataagaag 810  Q
    ||||| ||||||||||| || | ||||| ||||| |||||||||||  || |||||||| ||||    
T  6779 tttggtaatctctgaagtttttctggatctggatttgtatctgtttcttatatgaaatacgaag 6842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 6374 - 6438
Alignment:
Q  215 aataacggtgtatgagttgtttgtatgcatccgtgttctccaagtaatgatcaatttcagcctgg 279  Q
    ||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||||||||||    
T  6374 aataacggtgtatgagttgcttgtatgcatccttgttcttcgagtaatgatcaatttcagcctgg 6438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 647 - 812
Target Start/End: Complemental strand, 13360438 - 13360273
Alignment:
Q  647 taccttccgaattgcttttatggcagtgagcaaattatcaccaataaattcctcaaggaattcggccttgtgaagagcttccaaagattctgaaagtgat 746  Q
    |||||| | |||||||| ||||  ||| ||||| || | ||| |||||||| |||| ||| || | ||| || |||||||||||||||||||| ||||||    
T  13360438 tacctttccaattgcttctatgatagttagcaacttctgaccgataaattcatcaaagaaatcagtcttatggagagcttccaaagattctgagagtgat 13360339  T
Q  747 tttggcaatctctgaaggttgtttggatttggatctgtatctgtttgatacatgaaataagaagtt 812  Q
    |||||||||||||||||||||| | ||||||||||| | ||||||| |||||| ||||| ||||||    
T  13360338 tttggcaatctctgaaggttgtctagatttggatctatgtctgtttcatacataaaatatgaagtt 13360273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 690 - 812
Target Start/End: Original strand, 13294937 - 13295059
Alignment:
Q  690 ataaattcctcaaggaattcggccttgtgaagagcttccaaagattctgaaagtgattttggcaatctctgaaggttgtttggatttggatctgtatctg 789  Q
    |||||||| |||| ||| || | ||| || |||||||||||||||||||| |||||||||||||||||||||||||| | | ||||||||||||| ||||    
T  13294937 ataaattcatcaaagaaatcagtcttatggagagcttccaaagattctgagagtgattttggcaatctctgaaggttttctagatttggatctgtgtctg 13295036  T
Q  790 tttgatacatgaaataagaagtt 812  Q
    ||| |||||| ||||| ||||||    
T  13295037 tttcatacataaaatatgaagtt 13295059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 13294417 - 13294476
Alignment:
Q  215 aataacggtgtatgagttgtttgtatgcatccgtgttctccaagtaatgatcaatttcag 274  Q
    |||| ||||| |||||||| |||||||| ||| |||||| | ||||||||||||||||||    
T  13294417 aatagcggtggatgagttgcttgtatgcgtccttgttcttcgagtaatgatcaatttcag 13294476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 13360918 - 13360839
Alignment:
Q  215 aataacggtgtatgagttgtttgtatgcatccgtgttctccaagtaatgatcaatttcagcctggtatcataagtcacat 294  Q
    |||| ||||| |||||||| |||||||| ||| |||||| | |||| |||||||||||||||| | |||| |||| ||||    
T  13360918 aatagcggtggatgagttgcttgtatgcgtccttgttcttcgagtattgatcaatttcagccttgcatcacaagtaacat 13360839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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