View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9074_low_20 (Length: 349)
Name: NF9074_low_20
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 48449686 - 48450017
Alignment:
| Q |
1 |
gtcttattctgacagctatctatgttgctccttcaaccgtatacaagccacatctgtgcaaccaaaacttaaggacaacgggtcaatgggaacttctcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48449686 |
gtcttattctgacagctatctatgttgctccttcaaccgtatacaagccacatctgtgcaaccaaaacttaaggacaacgggtcaatgggaacttctcca |
48449785 |
T |
|
| Q |
101 |
tttcaattttcaggttccattctcccaaattctttgcgctctttcttatttgaccaacaaaacggcaaggatatgaataaaaatgagaaggatgtaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48449786 |
tttcaattttcaggttccattctcccaaattctttgcgctctttcttatttgaccaacaaaacggcaaggatatgaataaaagggagaaggatgtaaata |
48449885 |
T |
|
| Q |
201 |
ttgaggaaaacatggtggaaactagtaatgaagagagagtaaatagagctaattggatagagaggcttgtggaaattaagaaacattggagaaacaggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48449886 |
ttgaggaaaacatggtggaaactagtaatgaagagagagtaaatagagctaattggatagagaggcttgtggaaattaagaaacattggagaaacaggtt |
48449985 |
T |
|
| Q |
301 |
accgaaagaaagcgttgatatggacgtgatgt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48449986 |
accgaaagaaagcgttgatatggacgtgatgt |
48450017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University