View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9074_low_22 (Length: 309)
Name: NF9074_low_22
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 27624472 - 27624750
Alignment:
| Q |
14 |
cattattattttatttaacaactgttatatacctgtgttaattgtgttttcactgtaactcattcaatttttgttctgaattgtatgatatatacatatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27624472 |
cattattattttatttaacaactgttatatacctgtgttaattgtgttttcactgtaactcattcaatttttgttctgaattgtatgatatatacatatg |
27624571 |
T |
|
| Q |
114 |
tatataactgaaaattgtttcttataatgtttcaatgcttcttatagtattcatgtgttttatttggttgatttctagggaatattgtcatgtgggctct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27624572 |
tatataactgaaaattgtttcttataatgtttcaatgcttcttatagtattcatgtgttttatttggttgatttctagggaatattgtcatgtgggctct |
27624671 |
T |
|
| Q |
214 |
aagagttcatggatatgtctttgctgtttcattttgtttcattaccctcatggctgcttcacaaaaaacagatccttca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27624672 |
aagagttcatggatatgtctttgctgtttcattttgtttcattaccctcatggctgcttcacaaaaaacagatccttca |
27624750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 290
Target Start/End: Original strand, 6855800 - 6856061
Alignment:
| Q |
28 |
ttaacaactgttatatacctgt--gttaattgtgttttcactgtaactcattcaatttttgttctgaattgtatgatatatacatatgtatataactgaa |
125 |
Q |
| |
|
||||||||||||| |||||| | ||||||| ||||||||||| ||||||||| ||||||||| |||||||||| | ||| |||| ||||||||||| |
|
|
| T |
6855800 |
ttaacaactgttacatacctttctgttaatttagttttcactgttactcattcagtttttgttcagaattgtatggtgtatgtatat--atataactgaa |
6855897 |
T |
|
| Q |
126 |
aattgtttcttataatgtttcaatgcttcttatag-tattcatgtgttttatttggttgatttctagggaatattgtcatgtgggctctaagagttcatg |
224 |
Q |
| |
|
||||||| |||| ||| ||| ||| | |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6855898 |
aattgttccttactatgactcactgcattttatttatattcatgc--tttatttggttgatttctagggaatattgtgatgtgggctctaagagttcatg |
6855995 |
T |
|
| Q |
225 |
gatatgtctttgctgtttcattttgtttcattaccctcatggctgcttcacaaaaaacagatcctt |
290 |
Q |
| |
|
|||||| ||| ||||| || ||||||||||| ||||| ||||||| |||| |||||||||||||| |
|
|
| T |
6855996 |
gatatgccttggctgtgtcgttttgtttcatcgccctcgtggctgcctcacgaaaaacagatcctt |
6856061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University