View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9074_low_3 (Length: 798)
Name: NF9074_low_3
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 700; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 42 - 782
Target Start/End: Original strand, 44199850 - 44200596
Alignment:
| Q |
42 |
atttgtagacaaactttccttgtttaaagaaaagttgaggcacataattgtattactacgaagcacctcaccagacatgacacttagtcacttacacttt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44199850 |
atttgtagacaaactttccttgtttaaagaaaagttgaagcacataattgtattactacgaagcacctcaccagacatgacacttagtcacttacacttt |
44199949 |
T |
|
| Q |
142 |
gatatcggtaataatttgagaaaatgaaccaatcgaatgtaatcatatttgttgatgttgtgttaatatcggacata------tatttcaatttgaagtg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
44199950 |
gatatcggtaataatttgagaaaatgaaccaatcgaatgtaatcatatttgttgatgttgtgttagtatcggacatcagacactatttcaatctgaagtg |
44200049 |
T |
|
| Q |
236 |
tcggtgctacattacatttactttagtagatgacatatggggaaaagtatcctcttatatagaagatacttcggtttgtactgagttggtttttgttaac |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200050 |
tcggtgctacattacatttactttagtagatgacatatggggaaaagtatcctcttatatagaagatacttcggtttgtactgagttggtttttgttaac |
44200149 |
T |
|
| Q |
336 |
tttttaatgtagtccgaaggagattgtacattggctgtagattacttcactttttcttccagtattgctgatcatatcagatctgcttctcttatcatta |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200150 |
tttttaatgtagtccgaaggagattgtacattggctgtagattacttcactttttcttccagtattgctgatcatatcagatctgcttctcttatcatta |
44200249 |
T |
|
| Q |
436 |
gccatgcaggtatgcttgctacaccttgtcctttgtatgttgttattcacattattatgtaattatagacacattgtatttcttaggtcttggtggcttg |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200250 |
gccatgcaggtatgcttgctacaccttgtcctttgtatgttgttattcacattattatgtaattatagacacattgtatttcttaggtcttggtggcttg |
44200349 |
T |
|
| Q |
536 |
tttgtattatgctctcccattatgattgagaagtattagtaatcatgtttaattatttaacggcatggtgtttgtctgtttggttaatatctgataacct |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200350 |
tttgtattatgctctcccattatgattgagaagtattagtaatcatgtttaattatttaacggcatggtgtttgtctgtttggttaatatctgataacct |
44200449 |
T |
|
| Q |
636 |
attcttttgacaaagttggcttttaaaaacagttggttttctgcaattaactcgctagttcaagtgagccaataatttataatgatttactttgccattc |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44200450 |
attcttttgacaaagttggcttttaaaaacggttggttttctgcaattaactcgctagttcaagtgagccaataatttataatgatttgctttgccattc |
44200549 |
T |
|
| Q |
736 |
cttccccttgctccacatatgaaatggaaatgatttttgtgttgtct |
782 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200550 |
cttccccttgctccacatatgaaatggaaatgatttttgtgttgtct |
44200596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 53791481 - 53791601
Alignment:
| Q |
332 |
taactttttaatgtagtccgaaggagattgtacattggctgtagattacttcactttttcttccagtattgctgatcatatcagatctgcttctcttatc |
431 |
Q |
| |
|
|||||||||| || |||| |||||||| || |||||||||| || |||||||||||||||||||||||||| |||||| |||||||||| |||||| || |
|
|
| T |
53791481 |
taactttttattgcagtctgaaggagaaggttcattggctgttgactacttcactttttcttccagtattgcagatcatctcagatctgcctctcttgtc |
53791580 |
T |
|
| Q |
432 |
attagccatgcaggtatgctt |
452 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
53791581 |
attagccatgcaggtatgctt |
53791601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University