View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9074_low_4 (Length: 736)
Name: NF9074_low_4
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 17 - 729
Target Start/End: Original strand, 48599373 - 48600086
Alignment:
| Q |
17 |
agacttcgcatcaaacaattgatatagtnnnnnnncttatactctactagaagtttaacaaggtttgaaagaaatgccggttaattaaagatacttactg |
116 |
Q |
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| T |
48599373 |
agacttcgcatcaaacaattgatatagtaaaaaaacttatactctactagaagtttaacaaggtttgaaagaaatgccagttaattaaagatacttactg |
48599472 |
T |
|
| Q |
117 |
taagtactgaggctggaactgccaatatagtcaaaggaatgtaagcaactgccctgaaaataaccaattgaatacaagtgattgagttcacaaactgagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48599473 |
taagtactgaggctggaactgccaatatagtcaaaggaatgtaagcaactgccctgaaaataaccaattgaatacaagtgattgagttcacaaactgagg |
48599572 |
T |
|
| Q |
217 |
cactcaagttaatcatcatccacattaatggcctaatattaacagccatgtaacattttaatatacaaacattcttttctatagtattatgattaatagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48599573 |
cactcaagttaatcatcatccacattaatggcctaatattaacagccatgtaacattttaatatacaaacattcttttctatagtattatgattaatagc |
48599672 |
T |
|
| Q |
317 |
cgatatttggtattatggtgggtatgccaaaatcacaatgacccgccatg-taccaaacatacactaaaactgactagaaatggaagcacatggacacga |
415 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
48599673 |
caatatttggtattatggtgggtatgccaaaatcacaatgactcgccatgataccaaacatacactacaactaactagaaatggaagcacatggacacga |
48599772 |
T |
|
| Q |
416 |
acaaaaaacaagtatcagggctatgagattggtgaaaagacaacatgagatagttaacatgtgaaaaacttagtagtcaaaagttaatattgacttacag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48599773 |
acaaaaaacaagtatcagggctatgagattggtgaaaagacaacatgagatagttaacatgtgaaaaacttagtagtcaaaagtaaatattgacttacag |
48599872 |
T |
|
| Q |
516 |
agcgagcggaccccacggcccaaggtcttgatcaacccatatcaagaaatccttcagaatctgcatggcgaaaatgtaaggggtaaccaannnnnnnnca |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48599873 |
agcgagcggaccccacggcccaaggtcttgatcaacccatatcaagaaatccttcagaatctgcatggcgaaaatgtaaggggtaaccaattttttttca |
48599972 |
T |
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| Q |
616 |
tgaattaaaatacaaatgtggtgcatgtaacgaaaaatattataaaaatggcattgcagtatgaatgcatgaacaagggagaagaaaaggattatcatat |
715 |
Q |
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| T |
48599973 |
tgaattaaaatacaaatgtggtgcatgtaacgaaaaatattacaaaaatggcattgcagtatgaatgcatgaacaagggagaagaaaaggattatcatat |
48600072 |
T |
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| Q |
716 |
gcaatagtattatc |
729 |
Q |
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| T |
48600073 |
gcaatagtattatc |
48600086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 7616285 - 7616219
Alignment:
| Q |
110 |
cttactgtaagtactgaggctggaactgccaatatagtcaaaggaatgtaagcaactgccctgaaaa |
176 |
Q |
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||||| ||||| ||||| |||||||||||||| | |||||| |||||||||||||| |||||||||| |
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| T |
7616285 |
cttacagtaagaactgaagctggaactgccaagacagtcaagggaatgtaagcaacagccctgaaaa |
7616219 |
T |
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