View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9074_low_6 (Length: 595)
Name: NF9074_low_6
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 18714985 - 18714414
Alignment:
| Q |
1 |
cccatccaatgtaacacatgggaccaaagcaaactaaaagtgttgcaaccaaaaaataaatgggatgcggtttctggttcaccgcaaccaaacacacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18714985 |
cccatccaatgtaacacatgggaccaaagcaaactaaaagtgttgcaaccaaaaaataaatgggatgcggtttctggttcaccgcaaccaaacacacaaa |
18714886 |
T |
|
| Q |
101 |
ccgagtctgatatcagcagagcacgtcgccgcaccaaattatctcgtgtgggcaatctattctgtaggaagcgccacaaacagacacctttgaagggata |
200 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18714885 |
ccgagtcagatatcagcaaagcacgtcgccgcaccaaattatctcgtgtgggcaatctattccgtaggaagcgccacgaacagacacctttgaagggata |
18714786 |
T |
|
| Q |
201 |
aacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaacgatgagaaggat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18714785 |
aacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgaactgtgtaacgatgagaaggat |
18714686 |
T |
|
| Q |
301 |
gtaataaccacctcctgcaccgtgtgttgttattgnnnnnnnnnnnnnnnnaaaactcggtatccgacgtgtgttgttattcttgttggtggtgatgagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18714685 |
gtaataaccacctcctgcaccgtgtgttgttatt----ttatttttttttgtaaactcggtatccgacgtgtgttgttattcttgttggtggtgatgagg |
18714590 |
T |
|
| Q |
401 |
ctccttgggctcattgacagaattcatacatctccaagtgcatatgggcaaatcaatggccatggtggcaaagccctaggtcagaaagggcgacacctac |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18714589 |
ctccttgggctcattgacagaattcatacatctccaagtgcatatcggcaaatcaatggccatggtggcaaagccctaggtcagaaagggcgacacctac |
18714490 |
T |
|
| Q |
501 |
tacaataaccactgatctccaatctgaacatgattgattgactcaaacaggctgcagttacaacgtgacttgattt |
576 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18714489 |
tacagtaaccactgatctccaatctgaacatgattgattgactcaagcaggctgcagttacaacgtgacttgattt |
18714414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 46609956 - 46610083
Alignment:
| Q |
188 |
ctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaa |
287 |
Q |
| |
|
||||||||| ||| |||| |||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
46609956 |
ctttgaaggaatatacttatgccatacatcatctaccatcgacctatacaccgggttaccgttgttggtgagaaagtggtaagcttcccgcaccgtgtaa |
46610055 |
T |
|
| Q |
288 |
cgatgagaaggatgtaataaccacctcc |
315 |
Q |
| |
|
| |||||||||||||| ||||||||||| |
|
|
| T |
46610056 |
ccatgagaaggatgtagtaaccacctcc |
46610083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 6519328 - 6519461
Alignment:
| Q |
182 |
agacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcact |
281 |
Q |
| |
|
||||||||||||||| ||| ||| ||||| |||||| | ||| ||||| |||||| |||| |||| |||| ||||||||| |||||| |||||||| |
|
|
| T |
6519328 |
agacacctttgaaggaatactcttatgccaaacatcatccaccgtcgacttgtccatcgggctaccgttgtaagtgagaaagcagtaagcttcccgcacc |
6519427 |
T |
|
| Q |
282 |
gtgtaacgatgagaaggatgtaataaccacctcc |
315 |
Q |
| |
|
|||||| || |||||||| ||| | |||||||| |
|
|
| T |
6519428 |
ttgtaaccattagaaggatttaaaagccacctcc |
6519461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 12237742 - 12237613
Alignment:
| Q |
186 |
acctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgtgt |
285 |
Q |
| |
|
||||| ||||||||| |||| ||||| |||||| |||||| ||||||| ||||| ||||||||||||| |||||||| || | |||||| ||||||| |
|
|
| T |
12237742 |
accttcgaagggatagacttatgccacacatcatctaccaacgacctgcccaccaggttaccattgtttgtgagaaaacgatatgactcccgtactgtgt |
12237643 |
T |
|
| Q |
286 |
aacgatgagaaggatgtaataaccacctcc |
315 |
Q |
| |
|
||| ||||||||||||||||||||| |||| |
|
|
| T |
12237642 |
aaccatgagaaggatgtaataaccatctcc |
12237613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 9594866 - 9594768
Alignment:
| Q |
6 |
ccaatgtaacacatgggaccaaagcaaactaaaagtgttgcaaccaaaaaataaatgggatgcggtttctggttcaccgcaaccaaacacacaaaccga |
104 |
Q |
| |
|
||||||||||||||| | |||||||||||| | | ||||||||| |||||||||||||| | |||||| || ||||||||||||| | ||||||||||| |
|
|
| T |
9594866 |
ccaatgtaacacatgagtccaaagcaaactgagaatgttgcaactaaaaaataaatgggctacggtttttgattcaccgcaaccagatacacaaaccga |
9594768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 25720801 - 25720710
Alignment:
| Q |
224 |
catcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaacgatgagaaggatgtaataaccacctcc |
315 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||| |||||| |||||| |||| || ||||||| ||||||||||| || ||||||||||| |
|
|
| T |
25720801 |
catcgacctatccacaaagttaccattattggtaagaaagcggtaagcttccctaaccgtgtaaccatgagaaggatctagtaaccacctcc |
25720710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 20122913 - 20122861
Alignment:
| Q |
183 |
gacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtc |
235 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||| | |||| ||||||||| |
|
|
| T |
20122913 |
gacacctttgagggaataaacttgtgccacacatcatcaaccaacgacctgtc |
20122861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 33412288 - 33412252
Alignment:
| Q |
80 |
caccgcaaccaaacacacaaaccgagtctgatatcag |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
33412288 |
caccgcaacctaacacacaaaccgagtctgctatcag |
33412252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University