View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9074_low_7 (Length: 578)
Name: NF9074_low_7
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 564
Target Start/End: Original strand, 42305109 - 42305655
Alignment:
| Q |
17 |
aataactccgttacaccttacatccattctaatctccgatccaattggtatattttttcaagtaatttccaatgttggtagtgaagaattagcacgtgaa |
116 |
Q |
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| T |
42305109 |
aataactccgttacaccttacatccattctaatctccaatccaattggtatactttttcaagtaatt-ccaatgttggtagtgaagaattagcacgtgaa |
42305207 |
T |
|
| Q |
117 |
cttgaaagggttccaaaacaagcattgaagaaattgccaactcaatcacctctagcaattatgtgtcggaaagcacttctcttgactatgccatactaag |
216 |
Q |
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| T |
42305208 |
cttgaaagggttccaaaacaagcattgaagaaattgccaactcaatcacctccagcaattatgtgtcgaaaagcacttctcttgactatgccgtattaag |
42305307 |
T |
|
| Q |
217 |
acggagattcaaccaatttagcctccttcattttataaagattacaatctgggaattaaaattgcaagtccacgagttcgttgaaatccttcaacaaaat |
316 |
Q |
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| T |
42305308 |
acggagaatcaaccaatttagcctccttcattttataaagattacaatctgggaattaaaattgcaagtccacgagttcgttgaaatccttcaacaaaat |
42305407 |
T |
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| Q |
317 |
taacaaaaaactatgaacatgtggatgtgatagaaacagcattagttggtaagatttgcattcaatgttgtcttattgataatagcacattacaaatatg |
416 |
Q |
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| T |
42305408 |
taacaaaaaactatgaacatgtcgatgtggtagaagcagcattagtcggtaagatttgcattcaatgttgtcttattgataatagcacattacaaatatg |
42305507 |
T |
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| Q |
417 |
tgataaataatttactattcgaagtccaaattaattatatataaattagaaggaatgnnnnnnnaagctttctagctgttcatcatatgaataatgaaca |
516 |
Q |
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| T |
42305508 |
tgataaataatttactattcgaagtccatattaattatatataaattagaaggaatgtttttttgagctttctagctgttcatcatatgaataatgaaca |
42305607 |
T |
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| Q |
517 |
cctttgaaatatacattatgagacaggaataccattgaacagaataat |
564 |
Q |
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| T |
42305608 |
cctttgaaatatacattatgagacaggaataccattgaacagaataat |
42305655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 42304625 - 42304443
Alignment:
| Q |
18 |
ataactccgttacaccttacatccattctaatctccgatccaattggtatattttttcaagtaatttccaatgttggtagtgaagaattagcacgtgaac |
117 |
Q |
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| T |
42304625 |
ataactcccttataccttgcatccattctaat-----atccatttggt-tatttttccaagtaagttccaatgttggtggtgaagaattagcacgtgaac |
42304532 |
T |
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| Q |
118 |
ttgaaagggttc-caaaacaagcattgaagaaattgccaactcaatcacctctagca-attatgtgtcggaaagcacttctcttgacta |
204 |
Q |
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| T |
42304531 |
ttgaaagggttctaaaaacaagcattgaagaaattgccaactcagtcacctccagcagattatgtatcgaaaagcacttctcttgacta |
42304443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 32356468 - 32356527
Alignment:
| Q |
278 |
ttgcaagtccacgagttcgttgaaatccttcaacaaaattaacaaaaaactatgaacatg |
337 |
Q |
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| T |
32356468 |
ttgcaagaccacaactttgttgaaatccttcaataaaataaacaaaaaactatgaacatg |
32356527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 33581175 - 33581259
Alignment:
| Q |
293 |
ttcgttgaaatccttcaacaaaattaacaaaaaactatgaacatgtggatgtgatagaaacagcattagttggtaagatttgcattcaatg |
383 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||| |||| | ||||| ||||||||| | ||||||||||||| ||||| |
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| T |
33581175 |
ttcgttgaaatccttcaacaaaataaacaaaaaactaagaatatgtag------tagaagcagcattagctagtaagatttgcatgcaatg |
33581259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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