View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9074_low_9 (Length: 441)
Name: NF9074_low_9
Description: NF9074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9074_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Complemental strand, 1452062 - 1451648
Alignment:
| Q |
12 |
tgttgaagaaaagaaaaagaagacagaaattctcttatcgggtcataaatatatatgggggaactgtccattcaagaattgttcagtttcgttgttgaac |
111 |
Q |
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| T |
1452062 |
tgttgcagaaaagaaaaagaagacagaaattctcctatcgggtgataaatatatatgggggaactgtccattcaagaattgttcagtttcgttgttgaac |
1451963 |
T |
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| Q |
112 |
gatgagattaaaattgtgaccaatgccgagtttccatcttgtcacaaattattctgcgcacaatgtaagattccatggcatggaggacataactgtcaaa |
211 |
Q |
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| T |
1451962 |
gatgagattaaaattgtgaccaatgctgagtttccatcttgtcacaaattattctgcgcacaatgtaagattccatggcatggaggacataactgtcaaa |
1451863 |
T |
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| Q |
212 |
gattccaacaaagagaaaatagaattttaaagaagagaaaatcattctttaaagaccgcgatgatgaaaagaagaggaagaaagtcacattcaccattga |
311 |
Q |
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| T |
1451862 |
gattccaacaaagagaaaatagaattttaaagaagagaaaatcattctttaaagaccgcgatgatgaaaagaagaggaagaaagtcacattcaccattga |
1451763 |
T |
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| Q |
312 |
tcaaccaaatcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaatttgaaagggattctcaaatgttcagtaacaagtaatgagaaagag |
411 |
Q |
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| T |
1451762 |
tcaaccaaatcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaatttgaaaaggattctcaaatgttcagtaacaagtaatgagaaagag |
1451663 |
T |
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| Q |
412 |
ttgaagaaagaaact |
426 |
Q |
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| T |
1451662 |
ttgaagaaagaaact |
1451648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 1455438 - 1455393
Alignment:
| Q |
320 |
atcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaa |
365 |
Q |
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| T |
1455438 |
atcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaa |
1455393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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