View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9075_high_2 (Length: 367)
Name: NF9075_high_2
Description: NF9075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9075_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 162 - 349
Target Start/End: Complemental strand, 16757718 - 16757530
Alignment:
| Q |
162 |
tcaattgctgaaaatcatgcccagtaaaaacaatcattatacagctcaagacnnnnnnn-caacaaaagtcaaatcctataaggtaatatttcagtgatt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16757718 |
tcaattgctgaaaatcatgcccagtaaaaacaatcattatacagctcaagacaaaaaaaacaacaaaagtcaaatccaataaggtaatatttcagtgatt |
16757619 |
T |
|
| Q |
261 |
gtattcatggtaaaggtcgccaatggcggaagacgaggtggacggttgcctgctcttgtatgtagtaattgggaatggtatggcgtaat |
349 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16757618 |
gtattcaggataaaggtcgccaatggcggaagacgaggtggacggttgcctgctcttgtatgtagtaatagggaatggtatggcgtaat |
16757530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 16757804 - 16757724
Alignment:
| Q |
44 |
tcaccactattattccaaacatagggagtggattcaagatacttgactcgtttgcatgtacatatgtgagaattacgttac |
124 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
16757804 |
tcaccgctattatttcaaacgcagggagtggattcaagatacttgactcgtttgcatgtatatatgtgaggattacgttac |
16757724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 16753276 - 16753167
Alignment:
| Q |
106 |
tatgtgagaattacgttacgag--agttctgctaatgttgaaaagtaaagatgttttttcaattgctgaaaatcatgcccagtaaaaacaatcattatac |
203 |
Q |
| |
|
||||||||||||| ||||| || ||||| |||| |||||||||||||| || ||||||||||||||||||||||| || |||| ||||||| || |||| |
|
|
| T |
16753276 |
tatgtgagaattaagttactagctagttcagctagtgttgaaaagtaaatatattttttcaattgctgaaaatcatccctagtagaaacaattatcatac |
16753177 |
T |
|
| Q |
204 |
agctcaagac |
213 |
Q |
| |
|
||| |||||| |
|
|
| T |
16753176 |
agcccaagac |
16753167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 16753378 - 16753326
Alignment:
| Q |
40 |
caattcaccactattattccaaacatagggagtggattcaagatacttgactc |
92 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| || ||||||| |
|
|
| T |
16753378 |
caattcaccactattattccaaacacagggagtggattcaagttaattgactc |
16753326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 16753079 - 16753027
Alignment:
| Q |
297 |
ggtggacggttgcctgctcttgtatgtagtaattgggaatggtatggcgtaat |
349 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | ||||||| ||||||||| |
|
|
| T |
16753079 |
ggtggacggttgcctgctcttggatgtagtaatcgagaatggtgtggcgtaat |
16753027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 32549196 - 32549275
Alignment:
| Q |
134 |
gctaatgttgaaaagtaaagatgttttttcaattgctgaaaatcatgcccagtaaaaacaatcattatacagctcaagac |
213 |
Q |
| |
|
||||||||| ||||||||| |||||| || || ||||||||||||| || ||||||| |||||| |||||||||||||| |
|
|
| T |
32549196 |
gctaatgttaaaaagtaaatatgtttatttaaatgctgaaaatcatcccaagtaaaagaaatcatcatacagctcaagac |
32549275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 32744222 - 32744148
Alignment:
| Q |
134 |
gctaatgttgaaaagtaaagatgttttttcaattgctgaaaatcatgcccagtaaaaacaa-tcattatacagct |
207 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||||||||||||||| | ||||||||| || ||||| ||||||| |
|
|
| T |
32744222 |
gctattgttgaaaagtaaatatgtttcttcaattgctgaaaatcatccgcagtaaaaaaaattcattgtacagct |
32744148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 32655295 - 32655339
Alignment:
| Q |
146 |
aagtaaagatgttttttcaattgctgaaaatcatgcccagtaaaa |
190 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
32655295 |
aagtaaatatgtttcttcaattgctgaaaatcatccccagtaaaa |
32655339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 32741826 - 32741773
Alignment:
| Q |
41 |
aattcaccactattattccaaacatagggagtggattcaagatacttgactcgt |
94 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
32741826 |
aattcaccagttttatttcaaacatagtgagtggactcaagttacttgactcgt |
32741773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 17584289 - 17584215
Alignment:
| Q |
138 |
atgttgaaaagtaaagatgttttttcaattgctgaaaatcatgcccagtaaaaacaatcattatacagctcaagac |
213 |
Q |
| |
|
|||||| |||||||| | |||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
17584289 |
atgttggaaagtaaataggtttcttcaattgctgaaaatcatccccagtaaaaa-tataattatacagctcaagac |
17584215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 17593081 - 17593028
Alignment:
| Q |
138 |
atgttgaaaagtaaagatgttttttcaattgctgaaaatcatgcccagtaaaaa |
191 |
Q |
| |
|
||||||||||||||| | |||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
17593081 |
atgttgaaaagtaaataggtttcttcaatttttgaaaatcatccccagtaaaaa |
17593028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 45832607 - 45832538
Alignment:
| Q |
139 |
tgttgaaaagtaaagatgttttttcaattgctgaaaatcatgcccagtaaaaacaatcattatacagctc |
208 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||| ||| || |||||||| || |||||||||||| |
|
|
| T |
45832607 |
tgttgaaaagtaaatatgtttccttaattgctgaaaaccatcccaagtaaaaaatattattatacagctc |
45832538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 32895433 - 32895381
Alignment:
| Q |
134 |
gctaatgttgaaaagtaaagatgttttttcaattgctgaaaatcatgcccagt |
186 |
Q |
| |
|
|||| ||||| ||| |||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
32895433 |
gctagtgttggaaaataaatatgtttcttcaattgctgaaaatcatccccagt |
32895381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University