View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9075_high_4 (Length: 227)
Name: NF9075_high_4
Description: NF9075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9075_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 2333146 - 2333343
Alignment:
| Q |
16 |
cataatcttttctagaatgtgtaagcttaattaagcttgctggtcttgctcagatgccagaaagaaatttttctagaaaagtttgcgaaaatcttaatct |
115 |
Q |
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| T |
2333146 |
cataatcttttctagaatgtgtaagcttaattaagcttgctggtcttgctcagatgccagaaagaattttttctagaaaagtttgcgaaaatcttaatct |
2333245 |
T |
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| Q |
116 |
tttccacctgctttttaccagaaaaggatgcatacccaatatatgttccggtgtaaaatcatgccgtgttaatatggccaccacgggcgatctctgtg |
213 |
Q |
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| T |
2333246 |
tttccacctgcttttaaccggaaaaggatgcatacccaatatatgttccggtgtaaaatcatgccgtgttaatatggccaccacgggcgatctctgtg |
2333343 |
T |
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Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 47778269 - 47778466
Alignment:
| Q |
16 |
cataatcttttctagaatgtgtaagcttaattaagcttgctggtcttgctcagatgccagaaagaaatttttctagaaaagtttgcgaaaatcttaatct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
47778269 |
cataatcttttctagaatgtgtaagcttaattaagcttgctggtcttgctcagatgccagaaagaattttttctagaaaagtttgccaaaatcttaatct |
47778368 |
T |
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| Q |
116 |
tttccacctgctttttaccagaaaaggatgcatacccaatatatgttccggtgtaaaatcatgccgtgttaatatggccaccacgggcgatctctgtg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47778369 |
tttccacctgctttttaccagaaaaggatgcatacccaatatatgttccggtgtaaaatcatgccgtgttaatatgcccaccacgggcgatctctgtg |
47778466 |
T |
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