View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9075_low_10 (Length: 329)
Name: NF9075_low_10
Description: NF9075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9075_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 51822646 - 51822325
Alignment:
| Q |
1 |
cagggctcgagtatttggacgggtcgatgaatcaattagaaggaaatctctctgagataaggtttttaagtaatctaatttcacttcatttcttcgaaaa |
100 |
Q |
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|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51822646 |
caggactcgagtatttggacggatcaatgaatcaattagaaggaaatctctctgagataaggtttttaagtaatctaatttcacttcaattcttcgaaaa |
51822547 |
T |
|
| Q |
101 |
caaattatccggcgagattccaccggagataggtgagtttaaaaacctccgggaactgtctctttacagaaacagattaacaggtccaattcctcagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51822546 |
caaattatccggcgagattccaccggagataggtgagtttaaaaacctccgggaactgtctctttacagaaacagattaacaggtccaattcctcagaag |
51822447 |
T |
|
| Q |
201 |
actggatcatggtcagaatttgaatacatcgacgtttcggagaatttcttaacgggttcaattccaccaaacatgtgcaacaaaggaaaaatgtacgcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51822446 |
actggatcatggtcagaatttgaatacatcgacgtttcggagaatttcttaacgggttcaattccaccaaacatgtgcaacaaaggaaaaatgtacgcac |
51822347 |
T |
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| Q |
301 |
ttcttcttcttcagaataatct |
322 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
51822346 |
ttcttcttcttcagaacaatct |
51822325 |
T |
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