View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9075_low_2 (Length: 637)
Name: NF9075_low_2
Description: NF9075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9075_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 237 - 627
Target Start/End: Original strand, 44798760 - 44799150
Alignment:
| Q |
237 |
cgatggcattgcttttctcatttcatcaaccactgatttctcgtctctctctaatggttacatgggccttcctcattctgatcaagattcttactttgcg |
336 |
Q |
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| T |
44798760 |
cgatggcattgcttttctcatttcatcaaccactgatttctcgtctctctctaatggttacatgggccttcctcattctgatcaagattcttactttgcg |
44798859 |
T |
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| Q |
337 |
gttgaatttgatacaagttttgatccttctcttggtgacattaatggaaaccacgttggtattgatcttggcagtgttgtttcttttgcttctgctgatc |
436 |
Q |
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| T |
44798860 |
gttgaatttgatacgagttttgatccttctcttggtgacattaatggaaaccacgttggtattgatcttggcagtgttgtttcttttgcttctgctgatc |
44798959 |
T |
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| Q |
437 |
ttctttcacgtcggattgatttgaaaagtgggaaaatcatcaatgcatggattgagtatagagatgatatgaaaatggttcgtgtttgggttagttactc |
536 |
Q |
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| T |
44798960 |
ttctttcacgtcggattgatttgaaaagtgggaaaatcatcaatgcatggattgagtatagagatgatatgaaaatggttcgtgtttgggttagttactc |
44799059 |
T |
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| Q |
537 |
ttcaactagacctccaacaccaattattgcttcattcattgatctttctgagagatttaaagagtttatgcatgttggtttctctgcttct |
627 |
Q |
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| T |
44799060 |
ttcaactagacctccaacaccaattattgcttcattcattgatctttctgagagatttaaagagtttatgcatgttggtttctctgcttct |
44799150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 44798632 - 44798698
Alignment:
| Q |
109 |
tctggaattggaagagctttctacctctatcctgttcgttttcttgatcctttaactaactcaaccg |
175 |
Q |
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| T |
44798632 |
tctggaattggaagagctttctacctctatcctgttcgttttcttgatcctttaactaactcaaccg |
44798698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 383408 - 383330
Alignment:
| Q |
1 |
tgataccttgcaagggcaataaagtttggttttagaaagcttttcttcttctttgatgttaaggcgtaaccaaccacta |
79 |
Q |
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| T |
383408 |
tgataccttgcaagggcaataaagtttggttttagaaagcttttcttcttctttgatgttaaggcgtaaccaaccacta |
383330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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