View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9075_low_3 (Length: 520)
Name: NF9075_low_3
Description: NF9075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9075_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 1127394 - 1127897
Alignment:
| Q |
1 |
agtgtcttttggtgaataaaggaaatgaatgatggtgatatgttatatactaacaattaattattattgtttataggaccaaaccacttcaagaaaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1127394 |
agtgtcttttggtgaataaaggaaatgaatgatggtgatatgttatgtactaacaattaattattattgtttataggaccaaaccactccaagaaaaaac |
1127493 |
T |
|
| Q |
101 |
aaagatgatcataaacgttagagattcgacaatggtgcggccgtcagaggaggttacacagcggacggtgtggaattccaacgttgatttggtggtaccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1127494 |
aaagatgatcataaacgttagagattcgacaatggtgcggccgtcagaggaggttacacagcggacggtgtggaattccaacgttgatttggtggtaccg |
1127593 |
T |
|
| Q |
201 |
aatttccatacaccaagtgtttacttttatagacctaatggtgcttccaatttctttgatgccaaggttcttaaagaagctcttagcaaggtgcttgtcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1127594 |
aatttccatacaccaagtgtttacttttatagacctaatggtgcttccaatttctttgatgccaaggttcttaaagaagctcttagcaaggtgcttgtcc |
1127693 |
T |
|
| Q |
301 |
cgttttatccaatggctggtcgtcttcgccgtgatgaagatggtcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctgacaccgg |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1127694 |
cgttttatccaatggctggtcgtcttcgtcgtgatgaagatggtcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctgacaccgg |
1127793 |
T |
|
| Q |
401 |
tggagtcgttgatgattttggagactttgctcccacgcttgagctccgtcagcttatcccagccgttgattattcgcgcggaatcgaaacatatcccctt |
500 |
Q |
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| T |
1127794 |
tggagtcgttgatgattttggagactttgctcccacgcttgagctccgccagcttatcccagccgttgattattcgcgcggaatcgaaacatatcccctt |
1127893 |
T |
|
| Q |
501 |
cttg |
504 |
Q |
| |
|
|||| |
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|
| T |
1127894 |
cttg |
1127897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 1108095 - 1108248
Alignment:
| Q |
244 |
cttccaatttctttgatgccaaggttcttaaagaagctcttagcaaggtgcttgtcccgttttatccaatggctggtcgtcttcgccgtgatgaagatgg |
343 |
Q |
| |
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||||||||||||| |||||||| || | || |||||||| ||| |||||||||||||||| ||||||||||| |||||||||| | || |||| || |
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| T |
1108095 |
cttccaatttcttcaatgccaagattatgaaggaagctctcagctaggtgcttgtcccgttctatccaatggcgggtcgtcttcattgggacaaagacgg |
1108194 |
T |
|
| Q |
344 |
tcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctgacac |
397 |
Q |
| |
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||||| ||||||| | ||| ||||||| |||||||||||||| || ||||| |
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|
| T |
1108195 |
ccgtgtagagattgtctacgatagtcaaggagtgctctttgtcgaagccgacac |
1108248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 171 - 475
Target Start/End: Complemental strand, 27359125 - 27358821
Alignment:
| Q |
171 |
tggaattccaacgttgatttggtggtaccgaatttccatacaccaagtgtttacttttatagacctaatggtgcttccaatttctttgatgccaaggttc |
270 |
Q |
| |
|
||||| |||||||| || |||||||| || ||||| || |||||||| || |||||||| || || || || | ||||||||||| ||||| ||| || |
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| T |
27359125 |
tggaactccaacgtcgacttggtggttccaaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagatta |
27359026 |
T |
|
| Q |
271 |
ttaaagaagctcttagcaaggtgcttgtcccgttttatccaatggctggtcgtcttcgccgtgatgaagatggtcgtgttgagattgattgtgatggtca |
370 |
Q |
| |
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| || |||||||| ||||||||||| |||||||| ||||||||||| | ||||| ||||| ||||||||||||||||||||| || |||| |||||||| |
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| T |
27359025 |
tgaaggaagctctaagcaaggtgctggtcccgttctatccaatggcagcccgtctccgccgagatgaagatggtcgtgttgagctttattgcgatggtca |
27358926 |
T |
|
| Q |
371 |
aggggtgctctttgtcgaggctgacaccggtggagtcgttgatgattttggagactttgctcccacgcttgagctccgtcagcttatcccagccgttgat |
470 |
Q |
| |
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|||||||||||| ||||| ||||| ||| | ||||||||| || | ||||||||||| || ||| ||||||||| | ||||||||||| ||| |
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| T |
27358925 |
aggggtgctcttcgtcgatgctgataccaccgcttccgttgatgacttcagtgactttgctccaacacttcgcctccgtcagttaatcccagccgtggat |
27358826 |
T |
|
| Q |
471 |
tattc |
475 |
Q |
| |
|
||||| |
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|
| T |
27358825 |
tattc |
27358821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 171 - 475
Target Start/End: Original strand, 45407981 - 45408285
Alignment:
| Q |
171 |
tggaattccaacgttgatttggtggtaccgaatttccatacaccaagtgtttacttttatagacctaatggtgcttccaatttctttgatgccaaggttc |
270 |
Q |
| |
|
|||||||||||||| || |||||||| || ||||| || |||||||| || |||||||| || || || || | ||||||||||| ||||| ||| || |
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|
| T |
45407981 |
tggaattccaacgtcgacttggtggttccaaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagatta |
45408080 |
T |
|
| Q |
271 |
ttaaagaagctcttagcaaggtgcttgtcccgttttatccaatggctggtcgtcttcgccgtgatgaagatggtcgtgttgagattgattgtgatggtca |
370 |
Q |
| |
|
| || |||||||| ||||||||||| |||| ||| ||||||||||| | ||||| ||||| |||||||||||||| ||||| || |||| |||||||| |
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|
| T |
45408081 |
tgaaggaagctctaagcaaggtgctggtcctgttctatccaatggcagcccgtctccgccgagatgaagatggtcgcattgagctttattgcgatggtca |
45408180 |
T |
|
| Q |
371 |
aggggtgctctttgtcgaggctgacaccggtggagtcgttgatgattttggagactttgctcccacgcttgagctccgtcagcttatcccagccgttgat |
470 |
Q |
| |
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|||||||||||| ||||| ||||| ||| | ||||||||| || || ||||||||||| || ||| ||||||||| | ||||||||||| ||| |
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| T |
45408181 |
aggggtgctcttcgtcgatgctgataccaccgcttccgttgatgacttcggtgactttgctccaacacttcgcctccgtcagttaatcccagccgtggat |
45408280 |
T |
|
| Q |
471 |
tattc |
475 |
Q |
| |
|
||||| |
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|
| T |
45408281 |
tattc |
45408285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 499
Target Start/End: Complemental strand, 31967424 - 31967020
Alignment:
| Q |
95 |
aaaaacaaagatgatcataaacgttagagattcgacaatggtgcggccgtcagaggaggttacacagcggacggtgtggaattccaacgttgatttggtg |
194 |
Q |
| |
|
|||||| | |||||||||||| || |||||||||| ||||||| || ||| |||||||| ||| |||| ||||||||| ||||| ||||||||| | |
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|
| T |
31967424 |
aaaaactacgatgatcataaatgtgagagattcgaagatggtgcaaccatcaaaggaggttgcacgacggagggtgtggaactccaatgttgatttgaag |
31967325 |
T |
|
| Q |
195 |
gtaccgaatttccatacaccaagtgtttacttttatagacctaatggtgcttccaatttctttgatgccaaggttcttaaagaagctcttagcaaggtgc |
294 |
Q |
| |
|
|| ||| | || || || ||| ||||||| |||||| | || ||||||| ||||| || ||||| || | || |||||||| ||||| |||| |
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|
| T |
31967324 |
acgccaaatattcacacgcccagtatttacttctatagaaccaacaccacttccaaattcttcgacaccaagattatgaaggaagctctcagcaaagtgc |
31967225 |
T |
|
| Q |
295 |
ttgtcccgttttatccaatggctggtcgtcttcgccgtgatgaagatggtcgtgttgagattgattgtgatggtcaaggggtgctctttgtcgaggctga |
394 |
Q |
| |
|
||||| | || ||||||||||| |||||| || | || |||| |||||||| ||||| || ||||| |||||||||||||||||||| || |||| |
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|
| T |
31967224 |
ttgtctcattctatccaatggcgggtcgtttttgttacgacaaagacggtcgtgtagagatcgactgtgacggtcaaggggtgctctttgttgaagctgc |
31967125 |
T |
|
| Q |
395 |
caccggtggagtcgttgatgattttggagactttgctcccacgcttgagctccgtcagcttatcccagccgttgattattcgcgcggaatcgaaacatat |
494 |
Q |
| |
|
||| | || | ||||||||||| |||||||||||||| | | | | |||||||| || |||||||| ||||||||||||||||||||| |
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|
| T |
31967124 |
cactaactcattcatagatgattttggtgactttgctcccacattgcacttgggccagcttattcccattgttgattactcgcgcggaatcgaaacatat |
31967025 |
T |
|
| Q |
495 |
cccct |
499 |
Q |
| |
|
||||| |
|
|
| T |
31967024 |
cccct |
31967020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 32016747 - 32016703
Alignment:
| Q |
94 |
aaaaaacaaagatgatcataaacgttagagattcgacaatggtgc |
138 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || ||||||| |
|
|
| T |
32016747 |
aaaaaacaaagatgatcataaatgtgagagattcaacgatggtgc |
32016703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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