View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9075_low_4 (Length: 517)

Name: NF9075_low_4
Description: NF9075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9075_low_4
NF9075_low_4
[»] chr4 (4 HSPs)
chr4 (19-166)||(12066994-12067141)
chr4 (274-325)||(12066838-12066889)
chr4 (474-510)||(12066650-12066686)
chr4 (73-136)||(24977653-24977715)
[»] chr6 (4 HSPs)
chr6 (70-166)||(10501787-10501883)
chr6 (85-166)||(28101457-28101538)
chr6 (90-154)||(32655547-32655611)
chr6 (81-151)||(28148435-28148502)
[»] chr1 (4 HSPs)
chr1 (47-155)||(9058057-9058165)
chr1 (50-166)||(42080493-42080608)
chr1 (83-166)||(16139878-16139960)
chr1 (33-83)||(16140273-16140323)
[»] chr2 (1 HSPs)
chr2 (70-166)||(35553943-35554039)
[»] chr5 (3 HSPs)
chr5 (55-166)||(18519334-18519445)
chr5 (70-166)||(36906452-36906547)
chr5 (85-166)||(3248213-3248289)
[»] chr3 (2 HSPs)
chr3 (70-101)||(1511223-1511254)
chr3 (122-166)||(1511179-1511223)
[»] chr8 (1 HSPs)
chr8 (121-166)||(4922928-4922973)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 12067141 - 12066994
Alignment:
Q  19 atttgtagggttagttagtttagacaattgatttgattctttgcatatatgttgttttagttgagtttggtcatagttggcctgcttatatattgtaata 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12067141 atttgtagggttagttagtttagataattgatttgattctttgcatatatgttgttttagttgagtttggtcatagttggcctgcttatatgttgtaata 12067042  T
Q  119 aggttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    ||||||| ||||||| |||||||| ||| |||||||| ||||||||||    
T  12067041 aggttcatgcctacttctgctttgtaatttaatttttctagctttgat 12066994  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 12066889 - 12066838
Alignment:
Q  274 agggaaaatcagtttaattcttgaaattgttccaaagaatttatgaggttgg 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12066889 agggaaaatcagtttaattcttgaaattgttccaaagaatttatgaggttgg 12066838  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 510
Target Start/End: Complemental strand, 12066686 - 12066650
Alignment:
Q  474 tctagctgcccgacactaaatatctctctctctgctt 510  Q
    |||||||||||||||||||||||||||||| ||||||    
T  12066686 tctagctgcccgacactaaatatctctctcactgctt 12066650  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 24977715 - 24977653
Alignment:
Q  73 ttttagttgagtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcct 136  Q
    ||||||||||| |||| | |||||||| ||||||| | ||||||||||||||||||||| ||||    
T  24977715 ttttagttgagcttgggcgtagttggcttgcttat-tgttgtaataaggttcaagcctattcct 24977653  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 10501883 - 10501787
Alignment:
Q  70 ttgttttagttgagtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||||| | |||| |||| |||||| |||||||| |||||||| ||||||||||    
T  10501883 ttgttttagttgagtttggtcataattggtctgcttatatgttgtaatatgtttcatgccttctcctgttttgcaatttaatttttctagctttgat 10501787  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 28101538 - 28101457
Alignment:
Q  85 ttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    ||||||||||||||||| | ||||| ||||||||||||||| |||| ||||||||||||| | |||||||| | ||||||||    
T  28101538 ttggtcatagttggcctacatatatgttgtaataaggttcaggcctcctcctgctttgcattttaatttttcttgctttgat 28101457  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 32655547 - 32655611
Alignment:
Q  90 catagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaatttt 154  Q
    |||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||| |||||||    
T  32655547 catagttggcctgcttttatgttgtaataaggttcaggtctactcctgctttgcaatttaatttt 32655611  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 28148435 - 28148502
Alignment:
Q  81 gagtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaat 151  Q
    ||||||||||||| ||| ||||||||||| ||| ||   |||||| ||||||| |||||||||||| ||||    
T  28148435 gagtttggtcataattgacctgcttatatgttgcaa---ggttcatgcctacttctgctttgcaatttaat 28148502  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 9058057 - 9058165
Alignment:
Q  47 tgatttgattctttgcatatatgttgttttagttgagtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaat 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||| | || |||||||  | ||||||||||||  ||||||| |||||||| ||    
T  9058057 tgatttgattctttgtatatatgttgttttagttgagtttggttatagtttgactccttatatgctttaataaggttcagacctactcttgctttgctat 9058156  T
Q  147 ctaattttt 155  Q
     ||||||||    
T  9058157 ttaattttt 9058165  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 42080608 - 42080493
Alignment:
Q  50 tttgattctttgcatatatgttgttttagttgagtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatcta 149  Q
    |||| ||||| ||||||||||||||||||||||| | ||||||||||| ||||||||| | ||||||||||||| | ||||| |||| ||||| | | ||    
T  42080608 tttgcttcttagcatatatgttgttttagttgagat-ggtcatagttgacctgcttatttgttgtaataaggttgaggcctattcctcctttggatttta 42080510  T
Q  150 atttttttagctttgat 166  Q
    |||||| ||||||||||    
T  42080509 atttttctagctttgat 42080493  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 16139960 - 16139878
Alignment:
Q  83 gtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    ||||||||||||||||||||||| | | |||||||||| |||| |||||||| || |||||||| |||||||| || |||||||    
T  16139960 gtttggtcatagttggcctgctt-tttgttgtaataagattcaggcctactcttgttttgcaatttaatttttctaactttgat 16139878  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 16140323 - 16140273
Alignment:
Q  33 ttagtttagacaattgatttgattctttgcatatatgttgttttagttgag 83  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  16140323 ttagtttagacagatgatttgattctttgcatacatgttgttttagttgag 16140273  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 35554039 - 35553943
Alignment:
Q  70 ttgttttagttgagtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    ||||||||||  || ||||||||||||||||| | ||||| ||||||||||||||| |||| |||||| |||||| | |||||||| | ||||||||    
T  35554039 ttgttttagtatagattggtcatagttggcctacatatatgttgtaataaggttcaggcctcctcctgatttgcattttaatttttcttgctttgat 35553943  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 18519334 - 18519445
Alignment:
Q  55 ttctttgcatatatgttgttttagttgagtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaatttt 154  Q
    ||||| |||||||| || ||||||||||||||| |||||||||  | ||| || | |||||||| |||||| |||||||||||| | ||| | |||||||    
T  18519334 ttcttagcatatatattattttagttgagtttgatcatagttgatccgctaatgtgttgtaatatggttcaggcctactcctgcctagcattttaatttt 18519433  T
Q  155 tttagctttgat 166  Q
    | ||||||||||    
T  18519434 tctagctttgat 18519445  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 36906452 - 36906547
Alignment:
Q  70 ttgttttagttgagtttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    ||||||||||  || ||||||||||||||||| | ||||| |||||||||||||| | ||| ||| || |||||| | |||||||| | ||||||||    
T  36906452 ttgttttagtatagattggtcatagttggcctacatatatgttgtaataaggttc-atcctcctcatgatttgcattttaatttttcttgctttgat 36906547  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 3248289 - 3248213
Alignment:
Q  85 ttggtcatagttggcctgcttatatattgtaataaggttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    ||||||||||||||||||| ||     |||||||||||||| |||| ||||| ||||||| | |||||||| | ||||||||    
T  3248289 ttggtcatagttggcctgcata-----tgtaataaggttcaggcctcctcctactttgcattttaatttttcttgctttgat 3248213  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 1511254 - 1511223
Alignment:
Q  70 ttgttttagttgagtttggtcatagttggcct 101  Q
    ||||||||||||||||||||||||||||||||    
T  1511254 ttgttttagttgagtttggtcatagttggcct 1511223  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 1511223 - 1511179
Alignment:
Q  122 ttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    |||| |||||||||||||||||| | |||||||| ||||||||||    
T  1511223 ttcatgcctactcctgctttgcattttaatttttctagctttgat 1511179  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 4922928 - 4922973
Alignment:
Q  121 gttcaagcctactcctgctttgcaatctaatttttttagctttgat 166  Q
    |||||||||||||||||||| ||||| | |||||| ||||||||||    
T  4922928 gttcaagcctactcctgcttagcaattttatttttctagctttgat 4922973  T

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