View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9075_low_5 (Length: 491)
Name: NF9075_low_5
Description: NF9075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9075_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 282 - 476
Target Start/End: Original strand, 47707746 - 47707940
Alignment:
| Q |
282 |
cttgggcatgatgtttctcatgtgatgaaatctaaaagggtgttgcacaagacaaagaggttgttatttgattgtgtgagagaacttgcaaaaagtcttc |
381 |
Q |
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| T |
47707746 |
cttgggcatgatgtttctcatgtgatgaaatctaaaagggtgttgcacaagacaaagaggttgttatttgattgtgtgagagaacttacaaaaaatcttc |
47707845 |
T |
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| Q |
382 |
cagataaagattgtaagcaattcatgggtgccgaaaagttggggaagatgttatgggagaggacaaaagaatggagcgaaagaggtggaaattat |
476 |
Q |
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| T |
47707846 |
cagaaaaagattgtaagcaattcatgggtgccgaaaagttggggaagatgttatgggagaggacaaaagaatggagtgaaagaggtggaaattat |
47707940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 47707397 - 47707694
Alignment:
| Q |
15 |
agatgtatagaagaaggtaaattaagt-agtttagttcttttacattttcataatctaagaatagnnnnnnnnn-------ctgcatttgttaaattaaa |
106 |
Q |
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| T |
47707397 |
agatgtatagaagaaggtaaattaagttagtttagttcttttgcattttcataatctaagaatagtttttttttttcttttctgcatttgttaaattaaa |
47707496 |
T |
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| Q |
107 |
aaattggttagaatttgactttataacctcaagagac--------------------gaattaattactccttttgattatatatcagtctgtgtgacac |
186 |
Q |
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| T |
47707497 |
aaattggttagaatttgactttataacctcaagagacgaatttataatctctaagacgaattaattactccttttgattatgtatcagtctgtgtgacac |
47707596 |
T |
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| Q |
187 |
atgaaacattgaacaagaatgtctgtgtttgcggcatggttgtgccgaagaaattcaccgaggaatctctactatcagctgctctatttagttcactt |
284 |
Q |
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| T |
47707597 |
atgaaacattgaacaagaatgtctgtgtttgcggcgtggttgtgccgaagaaattcaccgaggaatctctactatcagctgctctatttagttcactt |
47707694 |
T |
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