View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9075_low_6 (Length: 482)
Name: NF9075_low_6
Description: NF9075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9075_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 42223191 - 42222731
Alignment:
| Q |
1 |
tgggtgggaaaaaatttacattccaaaaagccccttacacagagaataataaccaacaaattgaatatcaatcaagtgaaaagaatggaaaggaaaatgg |
100 |
Q |
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| T |
42223191 |
tgggtgggaaaaaatttacattccaaaaagccccttacacagagaataataaccaacaaattgaatatcaa----gtgaaaagaatggaaaggaaaatgg |
42223096 |
T |
|
| Q |
101 |
aaccatttcaagtcagagtaaggttcagaagaatagaattgatatgcccattgtaaaacatccagcggccacccaagggcttaaacgttcacctgcgcaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42223095 |
aaacatttcaagtcagagtaaggttcagaagaatagaattgatacgcccattgtaaaacatccaacggccacccaagggcttaaacgttcacctgcgcaa |
42222996 |
T |
|
| Q |
201 |
taacatgtaaactaaagtagtcaataaatctcaaatagaggaaaagccaaactagaagaccacaatgcaactcccttcgcc-aaaagaagaccactccaa |
299 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42222995 |
taacatgtaaactaaagtagtcaataaatctcgaatagaggaaaagccaaactagaagaccacaatgcaactcccttcgccaaaaagaagaccactccaa |
42222896 |
T |
|
| Q |
300 |
agtacgagcgaaagacaaagtcataaaaccaaactagaattttgctttctaattagagttacaaatgctagaatccacatgccacagtgtgactgagata |
399 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42222895 |
agtacgagcgaaagataaagtcataaaaccaaactagaattttgctttctaattagagttacaaaggctagaatccacatgccacagtgtgactgagata |
42222796 |
T |
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| Q |
400 |
caagtctccaaacgaggagtcaatgaataataaaattaagcaaaccttttcattaagtgaacgga |
464 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222795 |
caagtctcctaacgaggagtcaatgaataataaaattaagcaaaccttttcattaagtgaacgga |
42222731 |
T |
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