View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9076_high_17 (Length: 226)
Name: NF9076_high_17
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 36 - 204
Target Start/End: Complemental strand, 37876454 - 37876284
Alignment:
| Q |
36 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataataata---taaaatcaggcattcataaaacatcacttt |
132 |
Q |
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| T |
37876454 |
atcaaaactataatttaccattggagtcttttagacatttcatgtctcaaaatctataataataataatataaaatcaggcattcataaaacttcccttt |
37876355 |
T |
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| Q |
133 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacatggagaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37876354 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagac-ccccacatggagaa |
37876284 |
T |
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Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 23895227 - 23895397
Alignment:
| Q |
36 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataa---taataatataaaatcaggcattcataaaacatcacttt |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
23895227 |
atcaaaactataatttaccattggagtcttttagacatttcatgtctcaaaatctataataataataatataaaatcaggcattcataaaacttcccttt |
23895326 |
T |
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| Q |
133 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacatggagaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23895327 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaaga-cccccacatggagaa |
23895397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 18107053 - 18106964
Alignment:
| Q |
99 |
aatataaaatcaggcattcataaaacatcacttttatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagac |
189 |
Q |
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||||||||||||| ||| |||||| | || ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
18107053 |
aatataaaatcagacat-cataaagcttcccttttatgcgcataacacctatatcataaagcttaatagttaaactgagcaatatgaagac |
18106964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 18138725 - 18138786
Alignment:
| Q |
36 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataa |
97 |
Q |
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|||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
18138725 |
atcaaaactacaatttagcattggagtcttttagagattccatgtctcaaaatctataataa |
18138786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 18097626 - 18097565
Alignment:
| Q |
36 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataa |
97 |
Q |
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||||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
18097626 |
atcaaaactataatttagcgttgaagtctattagacattccatgtctcaaaatctataataa |
18097565 |
T |
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