View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9076_high_5 (Length: 460)

Name: NF9076_high_5
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9076_high_5
NF9076_high_5
[»] chr1 (21 HSPs)
chr1 (1-261)||(22079506-22079757)
chr1 (21-180)||(12318318-12318477)
chr1 (8-180)||(41136019-41136187)
chr1 (40-180)||(6808686-6808823)
chr1 (43-167)||(9109224-9109350)
chr1 (64-164)||(28242562-28242666)
chr1 (39-180)||(25652317-25652458)
chr1 (240-276)||(9599414-9599450)
chr1 (80-149)||(31925534-31925603)
chr1 (86-151)||(31929379-31929444)
chr1 (80-164)||(37168567-37168656)
chr1 (237-272)||(7124371-7124406)
chr1 (237-276)||(25715343-25715382)
chr1 (17-100)||(49893482-49893565)
chr1 (237-282)||(4590549-4590594)
chr1 (100-164)||(7482033-7482097)
chr1 (237-277)||(10200323-10200363)
chr1 (100-152)||(34603860-34603912)
chr1 (240-284)||(36339824-36339868)
chr1 (237-277)||(43481815-43481855)
chr1 (237-273)||(44751713-44751749)
[»] chr5 (12 HSPs)
chr5 (21-180)||(316977-317138)
chr5 (40-180)||(10054610-10054750)
chr5 (39-180)||(8445927-8446064)
chr5 (56-180)||(14689270-14689394)
chr5 (39-178)||(33905821-33905960)
chr5 (21-151)||(10700473-10700603)
chr5 (102-182)||(4160885-4160965)
chr5 (8-117)||(8038399-8038508)
chr5 (240-284)||(7359281-7359325)
chr5 (237-273)||(16347397-16347433)
chr5 (117-161)||(30803113-30803157)
chr5 (237-273)||(42272706-42272742)
[»] chr3 (16 HSPs)
chr3 (40-180)||(20937890-20938030)
chr3 (46-182)||(1683713-1683849)
chr3 (21-177)||(5270586-5270743)
chr3 (79-145)||(5433774-5433840)
chr3 (238-284)||(29601110-29601156)
chr3 (237-275)||(40672384-40672422)
chr3 (237-284)||(24778626-24778673)
chr3 (237-284)||(40991649-40991696)
chr3 (237-276)||(49503585-49503624)
chr3 (63-156)||(36019104-36019201)
chr3 (79-162)||(41819334-41819419)
chr3 (70-123)||(36796953-36797006)
chr3 (80-117)||(49228708-49228745)
chr3 (237-273)||(19676098-19676134)
chr3 (9-53)||(22859587-22859631)
chr3 (237-273)||(35465758-35465794)
[»] chr4 (23 HSPs)
chr4 (21-180)||(33990059-33990217)
chr4 (68-180)||(33090129-33090241)
chr4 (39-180)||(41961630-41961773)
chr4 (82-180)||(34113063-34113161)
chr4 (21-164)||(26699254-26699396)
chr4 (33-180)||(38811000-38811145)
chr4 (40-180)||(3786195-3786341)
chr4 (79-180)||(35662711-35662814)
chr4 (79-180)||(54881574-54881677)
chr4 (39-152)||(55085266-55085378)
chr4 (18-118)||(6719766-6719866)
chr4 (237-277)||(47265212-47265252)
chr4 (237-276)||(15665327-15665366)
chr4 (237-284)||(26024867-26024914)
chr4 (63-182)||(41964669-41964796)
chr4 (237-284)||(55007964-55008011)
chr4 (237-278)||(7947161-7947202)
chr4 (237-282)||(56375510-56375555)
chr4 (237-277)||(4879126-4879166)
chr4 (50-150)||(12073635-12073737)
chr4 (237-273)||(23906314-23906350)
chr4 (237-277)||(50862856-50862896)
chr4 (237-285)||(50967045-50967093)
[»] chr6 (9 HSPs)
chr6 (79-180)||(25073834-25073935)
chr6 (23-124)||(5739845-5739946)
chr6 (24-92)||(11660820-11660888)
chr6 (135-180)||(4386859-4386904)
chr6 (237-276)||(34522-34561)
chr6 (237-276)||(30031482-30031521)
chr6 (100-162)||(26800884-26800946)
chr6 (237-282)||(608381-608426)
chr6 (237-274)||(655411-655448)
[»] scaffold0002 (1 HSPs)
scaffold0002 (39-177)||(490125-490256)
[»] chr2 (12 HSPs)
chr2 (39-177)||(42261290-42261421)
chr2 (46-179)||(30217843-30217974)
chr2 (18-123)||(28197102-28197207)
chr2 (79-180)||(33648443-33648546)
chr2 (79-180)||(40935421-40935522)
chr2 (18-134)||(16676440-16676556)
chr2 (63-180)||(7451374-7451498)
chr2 (237-276)||(10516766-10516805)
chr2 (79-149)||(24398351-24398422)
chr2 (237-275)||(18959138-18959176)
chr2 (79-128)||(32004349-32004399)
chr2 (240-284)||(3720435-3720479)
[»] chr8 (13 HSPs)
chr8 (13-91)||(4927623-4927701)
chr8 (39-130)||(11137258-11137349)
chr8 (79-180)||(3772462-3772569)
chr8 (15-110)||(7624812-7624906)
chr8 (130-179)||(15691114-15691163)
chr8 (237-284)||(16035744-16035791)
chr8 (237-284)||(30689953-30690000)
chr8 (237-276)||(45041333-45041372)
chr8 (237-284)||(45419453-45419500)
chr8 (130-180)||(10240436-10240486)
chr8 (99-180)||(40222018-40222100)
chr8 (240-272)||(6483525-6483557)
chr8 (237-273)||(44047549-44047585)
[»] scaffold0197 (1 HSPs)
scaffold0197 (131-178)||(1204-1251)
[»] chr7 (16 HSPs)
chr7 (63-180)||(2390541-2390665)
chr7 (237-276)||(20158688-20158727)
chr7 (39-100)||(1360048-1360109)
chr7 (131-180)||(26639642-26639691)
chr7 (237-282)||(45601696-45601741)
chr7 (40-87)||(6687990-6688037)
chr7 (237-276)||(9210721-9210760)
chr7 (50-180)||(22328185-22328315)
chr7 (237-284)||(36101794-36101841)
chr7 (130-180)||(1359978-1360028)
chr7 (56-110)||(43363333-43363387)
chr7 (237-282)||(2885739-2885784)
chr7 (63-151)||(3259250-3259342)
chr7 (237-282)||(7273320-7273365)
chr7 (237-282)||(43491528-43491573)
chr7 (63-164)||(8359126-8359228)
[»] scaffold0236 (1 HSPs)
scaffold0236 (21-162)||(10703-10848)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22079506 - 22079757
Alignment:
Q  1 tcctctactttatgttattgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttatt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        
T  22079506 tcctctactttatgttattgttctttgattcaattgttgttttgctttacacttgtttgtttgattagatctagataagttgttgttgcttgtggt---- 22079601  T
Q  101 ttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaatatctttgttggaagaaccg 200  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22079602 -----tattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaatatctttgttggaagaaccg 22079696  T
Q  201 ttttgctttttattttcttcatggtaaatcttcttgttatcccactaagtaaggtcagcta 261  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22079697 ttttactttttattttcttcatggtaaatcttcttgttatcccactaagtaaggtcagcta 22079757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 12318477 - 12318318
Alignment:
Q  21 ttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattg 120  Q
    ||||||| ||||||| |  |||||||||||| ||||||| | | ||| ||||||||  ||||||||||| |||| ||||||||||||||| ||| |||||    
T  12318477 ttctttggttcaattatgattttgctttacaattggttgctaggttaaatctagatctgttgttgttgcgtgtgcttattttggttattggttgccattg 12318378  T
Q  121 atacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    |||| || ||||   ||| ||||||||||||| |||||||||||| | ||||||||||||    
T  12318377 atacttgccccatgcatccaaatttcattgatgtgagatttggagctaccgaattcacaa 12318318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 41136019 - 41136187
Alignment:
Q  8 ctttatgttattgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggtta 107  Q
    |||||| || || |||||||||||| || |  |||||||||||||||| | |    |||||||||| | | ||||||||| |||||||||||||||||||    
T  41136019 ctttatcttgttattctttgattcagttgtgattttgctttacacttgctag----attagatctatacatgttgttgttacttgtggttattttggtta 41136114  T
Q  108 ttgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    ||| |||||| | |||| |  ||||| |||||||||||||||||| |||||||||||||| ||||||| ||||    
T  41136115 ttggttgtcaataatactttccccacgaatctaaatttcattgatgtgagatttggagttaccgaatttacaa 41136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 6808686 - 6808823
Alignment:
Q  40 ttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatct 139  Q
    |||||||||||||||||||  | ||| ||||||||||    ||||||| ||||| ||||||||||||||||  || ||||||||| | ||||| |||| |    
T  6808686 ttttgctttacacttggtttctagatcagatctagat----tgttgttacttgtagttattttggttattggctgccattgatacttatcccataaattt 6808781  T
Q  140 aaatttcattgatatgagatttggagtt-tccgaattcacaa 180  Q
    ||||||||||||| |||||||| |||||  ||||||||||||    
T  6808782 aaatttcattgatgtgagattttgagttacccgaattcacaa 6808823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 9109350 - 9109224
Alignment:
Q  43 tgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtc--attgatacatgtcccacaaatcta 140  Q
    ||||| ||| ||||||| | | ||||||||||||  |||||| || |||||||||||||| ||||||| |||||  |||||||| ||  | | |||||||    
T  9109350 tgcttcacagttggttgctagcttagatctagatctgttgttattacttgtggttattttagttattggttgtcatattgatacttgctcaagaaatcta 9109251  T
Q  141 aatttcattgatatgagatttggagtt 167  Q
    ||||| |||||||| ||||||||||||    
T  9109250 aattttattgatataagatttggagtt 9109224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 28242562 - 28242666
Alignment:
Q  64 attagatctagataagttgttgttgcttgtggttattt-----tggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgaga 158  Q
    |||||||||||||  |||||||||||||| ||||||||     ||||||||| ||||||||||||| ||  |||| |||||||||||||||||| ||||     
T  28242562 attagatctagatt-gttgttgttgcttgaggttatttacatttggttattggttgtcattgatacttgctccacgaatctaaatttcattgatgtgagg 28242660  T
Q  159 tttgga 164  Q
    ||||||    
T  28242661 tttgga 28242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 25652317 - 25652458
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatc 138  Q
    |||||||||||||||| |||| | ||||||||||| ||  ||||||||| |||||| |||||||| ||| || |||  |||||||| |  |||| | ||     
T  25652317 gttttgctttacacttagttgctagattagatctaaatttgttgttgttacttgtgattattttgattaatgattgcaattgatacttaccccatacatt 25652416  T
Q  139 taaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    ||||||  |||  | |||||||||||||| | ||||||||||    
T  25652417 taaattatattagtgtgagatttggagttacagaattcacaa 25652458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 9599414 - 9599450
Alignment:
Q  240 tcccactaagtaaggtcagctacatggatcaaattac 276  Q
    |||||||||||||||||||||||||||||||||||||    
T  9599414 tcccactaagtaaggtcagctacatggatcaaattac 9599450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 31925603 - 31925534
Alignment:
Q  80 ttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcatt 149  Q
    ||||| ||||||||||||| ||||||| ||| ||||||||||||| ||  | || |||||||||||||||    
T  31925603 ttgttattgcttgtggttaatttggttgttggttgtcattgatacttgctctacgaatctaaatttcatt 31925534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 31929444 - 31929379
Alignment:
Q  86 ttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattga 151  Q
    ||||||||||||| |||||||  || ||||||||||||| ||  |||| |||||||||||||||||    
T  31929444 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattga 31929379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 37168567 - 37168656
Alignment:
Q  80 ttgttgttgcttgtggttattt-----tggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttgga 164  Q
    ||||||||||||| ||||||||     ||||||||| ||||||||||||| ||  | || ||||||||||||||||||  ||||||||||    
T  37168567 ttgttgttgcttgaggttatttacatttggttattggttgtcattgatacttgctctacgaatctaaatttcattgatgcgagatttgga 37168656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 7124406 - 7124371
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaa 272  Q
    |||||||||||||| |||||||||||||||||||||    
T  7124406 ttatcccactaagtgaggtcagctacatggatcaaa 7124371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 25715343 - 25715382
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  25715343 ttatcccactaagtgaggtcggctacatggatcaaattac 25715382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 49893565 - 49893482
Alignment:
Q  17 attgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttatt 100  Q
    ||||||||||| ||| ||| || | |||||||||||||||||| |   ||||||||| ||| ||||||| |||||||| |||||    
T  49893565 attgttctttggttcgattgttatattgctttacacttggttgatacgttagatctaaatatgttgttgctgcttgtgattatt 49893482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 4590549 - 4590594
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcata 282  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||    
T  4590549 ttatcccactaagtggggtcggctacatggatcaaattacaccata 4590594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 7482097 - 7482033
Alignment:
Q  100 tttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttgga 164  Q
    ||||||||||| ||||||||||||| ||  |||| ||| ||||||| |||||| |||| ||||||    
T  7482097 tttggttattggttgtcattgatacttgctccacgaatttaaattttattgatgtgaggtttgga 7482033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 10200323 - 10200363
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattaca 277  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
T  10200323 ttatcccattaagtgaggtcggctacatggatcaaattaca 10200363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 34603860 - 34603912
Alignment:
Q  100 tttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgat 152  Q
    |||| |||||| ||||||||||||| ||  ||||||||||| |||||||||||    
T  34603860 tttgattattggttgtcattgatacttgctccacaaatctagatttcattgat 34603912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 36339824 - 36339868
Alignment:
Q  240 tcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    |||||||||||   ||||||||||||||||||||||| |||||||    
T  36339824 tcccactaagtggagtcagctacatggatcaaattacttcataat 36339868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 43481815 - 43481855
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattaca 277  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  43481815 ttatcccactaagtggggtcggctacatggatcaaattaca 43481855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 44751749 - 44751713
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaat 273  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  44751749 ttatcccactaagtgaggtcggctacatggatcaaat 44751713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 316977 - 317138
Alignment:
Q  21 ttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagat---aagttgttgttgcttgtggttattttggttattgtttgtca 117  Q
    ||||||| ||||||| | ||||||||||||||||||||| | ||| ||||||||||     |||||||||||||||||||||||||||||||| ||||||    
T  316977 ttctttggttcaattgtggttttgctttacacttggttgctagataagatctagatctgtcgttgttgttgcttgtggttattttggttattggttgtca 317076  T
Q  118 ttgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
     |||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  317077 ctgatacttgtcccacgaatctaaatttcattgatgtgagatttggagtttcc-aattcacaa 317138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 10054750 - 10054610
Alignment:
Q  40 ttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatct 139  Q
    |||||||||||||||||||| | ||||||||||||||  |||| |||||| ||||||||||||| |||||  ||||||||||||| ||||| ||||||||    
T  10054750 ttttgctttacacttggttgctagattagatctagatttgttgatgttgcatgtggttattttgattattagttgtcattgatacttgtcctacaaatct 10054651  T
Q  140 aaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    ||||||||||||||||||||||  |||| ||||||| ||||    
T  10054650 aaatttcattgatatgagatttaaagttaccgaatttacaa 10054610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 8445927 - 8446064
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatc 138  Q
    |||||| ||||||||||||||    |||||||||||||  ||||||||||||||||||||| ||| ||||   ||| ||||||||| |||||||||||||    
T  8445927 gttttgttttacacttggttg----attagatctagatctgttgttgttgcttgtggttatcttgattatcagttgccattgatacttgtcccacaaatc 8446022  T
Q  139 taaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    |||||||||||||| || |||||| |||| ||||||| ||||    
T  8446023 taaatttcattgatgtgggatttgtagttaccgaatttacaa 8446064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 14689394 - 14689270
Alignment:
Q  56 gttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatg 155  Q
    |||||| ||||||| ||||||  | |||||||| | ||||||||||||||||||| |||| ||| |||| ||||| ||| |||||||||||||| || ||    
T  14689394 gttgttagattagacctagatctgatgttgttggtggtggttattttggttattgattgttattaatacttgtcctacatatctaaatttcattcatgtg 14689295  T
Q  156 agatttggagtttccgaattcacaa 180  Q
    ||| ||| |||||| ||||||||||    
T  14689294 agaattgaagtttcggaattcacaa 14689270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 33905960 - 33905821
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatc 138  Q
    ||||| ||||||||||| ||| | ||||| |||| |||   |||  ||||| || ||||||||| ||||||| ||||||||||||| |||  ||||||||    
T  33905960 gttttactttacacttgattgctagattaaatcttgatctattggcgttgcgtgcggttattttagttattggttgtcattgatacttgtttcacaaatc 33905861  T
Q  139 taaatttcattgatatgagatttggagtttccgaattcac 178  Q
    ||||||| |||| | ||||||||||||||  |||||||||    
T  33905860 taaatttaattggtgtgagatttggagttgtcgaattcac 33905821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 10700603 - 10700473
Alignment:
Q  21 ttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattg 120  Q
    ||||||||||  ||| | |||||| |||||||||| ||||| ||||| || |||||   ||||| |||||||  |||||||||||||||| |||||||||    
T  10700603 ttctttgatttgattgtggttttgatttacacttgattgttagattaaatatagatccattgttattgcttgcagttattttggttattggttgtcattg 10700504  T
Q  121 atacatgtcccacaaatctaaatttcattga 151  Q
    ||||  | | |||| ||||||||||||||||    
T  10700503 atacccgcctcacacatctaaatttcattga 10700473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 4160885 - 4160965
Alignment:
Q  102 tggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaata 182  Q
    ||||||||| ||||||||||||| || |||| |||||||||||  |||||| |||||||||||||| || |||| ||||||    
T  4160885 tggttattggttgtcattgatacttgccccataaatctaaattatattgatgtgagatttggagttaccaaatttacaata 4160965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 8038399 - 8038508
Alignment:
Q  8 ctttatgttattgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggtta 107  Q
    |||||| ||||| || |||| ||| ||| | ||||| ||||||||||||||| | ||||||||| ||||   ||||||||| ||||| || |||||||||    
T  8038399 ctttatcttattattttttggttcgattgtggtttttctttacacttggttgctagattagatcaagatctattgttgttgattgtgattgttttggtta 8038498  T
Q  108 ttgtttgtca 117  Q
     || ||||||    
T  8038499 ctgattgtca 8038508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 7359281 - 7359325
Alignment:
Q  240 tcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    |||||||||||  |||||||||||||||||||||||| |||||||    
T  7359281 tcccactaagtggggtcagctacatggatcaaattacgtcataat 7359325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 16347397 - 16347433
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaat 273  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  16347397 ttatcccactaagtagggtcggctacatggatcaaat 16347433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 30803113 - 30803157
Alignment:
Q  117 attgatacatgtcccacaaatctaaatttcattgatatgagattt 161  Q
    |||||||| ||||| ||||||||||||||||||| | ||||||||    
T  30803113 attgatacttgtcctacaaatctaaatttcattggtgtgagattt 30803157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 42272742 - 42272706
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaat 273  Q
    ||||||||||||||  |||||||||||||||||||||    
T  42272742 ttatcccactaagtggggtcagctacatggatcaaat 42272706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 20937890 - 20938030
Alignment:
Q  40 ttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatct 139  Q
    |||| ||||||||||| ||  | ||||||||||||||  ||||||| ||||||| ||||||||| |||||  ||||||||||||| ||||||||||||||    
T  20937890 ttttactttacacttgattaatagattagatctagatttgttgttgctgcttgtagttattttgcttattagttgtcattgatacttgtcccacaaatct 20937989  T
Q  140 aaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    |||||| | |||| ||||||||||||| |||||||||||||    
T  20937990 aaattttactgatgtgagatttggagtgtccgaattcacaa 20938030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 1683713 - 1683849
Alignment:
Q  46 tttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaattt 145  Q
    |||||||| ||||  | ||||||||||||||    | |||||| |||| ||||| |||||||||| |||||||||||   ||||||||| ||||||||||    
T  1683713 tttacactaggtttctagattagatctagatctactattgttggttgtagttatgttggttattggttgtcattgatgtttgtcccacacatctaaattt 1683812  T
Q  146 cattgatatgagatttggagtttccgaattcacaata 182  Q
    ||||||| |||||||| ||||| ||||||||||||||    
T  1683813 cattgatgtgagatttagagttaccgaattcacaata 1683849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 5270586 - 5270743
Alignment:
Q  21 ttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtgg-ttattttggttattgtttgtcatt 119  Q
    ||||||| ||| ||| | ||||||| ||||||||||||| | ||||||||||||||   |||||||||||||||| || |||| ||||||| ||||||||    
T  5270586 ttctttggttcgattgtggttttgcattacacttggttgctagattagatctagatctattgttgttgcttgtggtttttttttgttattggttgtcatt 5270685  T
Q  120 gatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattca 177  Q
    ||||  |   |||  ||| |||||||||||||| |||||||| ||||| |||||||||    
T  5270686 gatattttcaccatgaatataaatttcattgatgtgagattttgagttaccgaattca 5270743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 5433840 - 5433774
Alignment:
Q  79 gttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaattt 145  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||  |||| |||||||||||    
T  5433840 gttgttgttgcttgtggttattttggttattggttgtcattgatacttgctccacgaatctaaattt 5433774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 29601156 - 29601110
Alignment:
Q  238 tatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||    
T  29601156 tatcccactaagtggggtcagctacatggatcaaattacatcataat 29601110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 40672384 - 40672422
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaatta 275  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40672384 ttatcccactaagtgaggtcagctacatggatcaaatta 40672422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 24778626 - 24778673
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  24778626 ttatcccactaagtggggtcggctacatggatcaaattacaccataat 24778673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 40991696 - 40991649
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  40991696 ttatctcactaagtggggtcagctacatggatcaaattacaccataat 40991649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 49503585 - 49503624
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  49503585 ttatcccactaagtagggtcggctacatggatcaaattac 49503624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 36019104 - 36019201
Alignment:
Q  63 gattagatctagataagttgttgttgcttgtggttattt-----tggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatga 156  Q
    ||||||||||||||  ||| |||||||||||||| ||||     || |||||| |||| |||||||| ||  |||| ||||||||||||||||||||||    
T  36019104 gattagatctagatt-gttattgttgcttgtggtaatttacatttgattattggttgtgattgatacttgctccacgaatctaaatttcattgatatga 36019201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 41819419 - 41819334
Alignment:
Q  79 gttgttgttgcttgtggtta--ttttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttg 162  Q
    |||||||||||||||| ||   |||||||| ||| ||| ||||||||| ||  |||| |||||||||||||||||| |||| ||||    
T  41819419 gttgttgttgcttgtgatttacttttggttgttggttgccattgatacttgctccacgaatctaaatttcattgatgtgaggtttg 41819334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 36796953 - 36797006
Alignment:
Q  70 tctagataagttgttgttgcttgtggttattttggttattgtttgtcattgata 123  Q
    |||||| | |||| ||||| ||||||||||||| ||||||| ||||||||||||    
T  36796953 tctagacatgttgctgttgattgtggttattttagttattgattgtcattgata 36797006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 49228745 - 49228708
Alignment:
Q  80 ttgttgttgcttgtggttattttggttattgtttgtca 117  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  49228745 ttgttgttgctcgtggttattttggttattggttgtca 49228708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 19676098 - 19676134
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaat 273  Q
    ||||||||||||||  |||||||||||||||||||||    
T  19676098 ttatcccactaagtggggtcagctacatggatcaaat 19676134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 22859587 - 22859631
Alignment:
Q  9 tttatgttattgttctttgattcaatttttgttttgctttacact 53  Q
    ||||| ||||||||||||||||||||| | ||||||| |||||||    
T  22859587 tttatcttattgttctttgattcaattgtggttttgcattacact 22859631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 35465794 - 35465758
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaat 273  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  35465794 ttatcccattaagtgaggtcagctacatggatcaaat 35465758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 33990059 - 33990217
Alignment:
Q  21 ttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattg 120  Q
    ||||||| ||||||| | | |||||| | |||||||||  | ||||||||||||||  |||||||||||||||| ||||||||||||||| ||| |||||    
T  33990059 ttctttggttcaattctggatttgctatgcacttggtttctagattagatctagatt-gttgttgttgcttgtgtttattttggttattgattgccattg 33990157  T
Q  121 atacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    |||| ||||||||||||||| ||||||||| | ||||||||||||||   ||||||||||    
T  33990158 atacttgtcccacaaatctagatttcattggtgtgagatttggagttcatgaattcacaa 33990217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 33090129 - 33090241
Alignment:
Q  68 gatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtt 167  Q
    |||||||||| ||||||||||||  ||||||||| |||||||| ||||||||||||| |  |||||||||| ||||||||||||| ||||||||||||||    
T  33090129 gatctagatatgttgttgttgctcttggttatttcggttattgattgtcattgatacttcccccacaaatcaaaatttcattgatgtgagatttggagtt 33090228  T
Q  168 tccgaattcacaa 180  Q
     ||||||||||||    
T  33090229 accgaattcacaa 33090241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 41961630 - 41961773
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatc 138  Q
    ||||||||||| || |||||  | ||||||||||||||   |||||||||||||| ||| |||||||||||| ||||||||||||| || |||||| |||    
T  41961630 gttttgctttaaacctggttactagattagatctagatctattgttgttgcttgtagtttttttggttattggttgtcattgatacttgccccacagatc 41961729  T
Q  139 taaatttcattga--tatgagatttggagtttccgaattcacaa 180  Q
    |||||||||||||  | |||| ||||||||| ||||| ||||||    
T  41961730 taaatttcattgatgtgtgagttttggagttaccgaactcacaa 41961773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 34113063 - 34113161
Alignment:
Q  82 gttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    ||||||||||||||||||||||||||||| ||||||||||| | |  |||||| ||||||||||||||||||||||| || ||||| || |||||||||    
T  34113063 gttgttgcttgtggttattttggttattgattgtcattgattcttaccccacacatctaaatttcattgatatgagaattagagttaccaaattcacaa 34113161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 26699396 - 26699254
Alignment:
Q  21 ttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattg 120  Q
    ||||||| ||||||| | |||||||| | ||||||| |  | ||||||||||||||  ||||| ||  |||||||||| ||||||||||| ||| |||||    
T  26699396 ttctttggttcaattatggttttgctatgcacttggattctagattagatctagatt-gttgtcgtgtcttgtggttaatttggttattggttgccattg 26699298  T
Q  121 atacatgtcccacaaatctaaatttcattgatatgagatttgga 164  Q
    |||| |||||||| |||||||||||||||||| |||| ||||||    
T  26699297 atacctgtcccacgaatctaaatttcattgatgtgaggtttgga 26699254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 180
Target Start/End: Complemental strand, 38811145 - 38811000
Alignment:
Q  33 atttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtccca 132  Q
    ||||| ||||| ||||||| ||||||| | |||||||| |||||| ||||||| |  |||||||||||||| | |||  ||||||||||||| || |||     
T  38811145 attttggttttactttacatttggttgctagattagatatagatatgttgttgat--ttgtggttattttgatcattagttgtcattgatacttgccccg 38811048  T
Q  133 caaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    | |||||||||||||||| | ||||||||| |||| || |||||||||    
T  38811047 cgaatctaaatttcattggtttgagatttgaagttaccaaattcacaa 38811000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 3786195 - 3786341
Alignment:
Q  40 ttttgctttacacttggttgtttgattagatctagataagttgttgtt------gcttgtggttattttggttattgtttgtcattgatacatgtcccac 133  Q
    ||||| |||||||||||||| |  |||||||||||||| |||||||||      | |||||||||||||||||| |  |||  |||||| | || ||||     
T  3786195 ttttgttttacacttggttgctatattagatctagatatgttgttgttattgttgtttgtggttattttggttagtaattgcaattgatgcttgccccat 3786294  T
Q  134 aaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  3786295 aaatctaaatttcattgatgtgagatatggagttaccgaattcacaa 3786341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 35662711 - 35662814
Alignment:
Q  79 gttgttgttgcttgtggtta-ttttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtt-tccgaattc 176  Q
    ||||||||||||| |||||| |||||||| ||| ||| ||||||||| ||  ||||||||||||||||||||||| |||  |||||| ||  ||||||||    
T  35662711 gttgttgttgcttatggttaattttggttgttggttgccattgatacttgctccacaaatctaaatttcattgatgtgaagtttggaattgaccgaattc 35662810  T
Q  177 acaa 180  Q
    ||||    
T  35662811 acaa 35662814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 54881574 - 54881677
Alignment:
Q  79 gttgttgttgcttgtggtt-attttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtt-tccgaattc 176  Q
    |||||| |||||||||||| ||||||||| ||| ||||||||||||| ||  |||| ||| |||||||||||||| |||  |||||| ||  ||||||||    
T  54881574 gttgttattgcttgtggtttattttggttgttggttgtcattgatacttgctccacgaatataaatttcattgatgtgaagtttggaattgaccgaattc 54881673  T
Q  177 acaa 180  Q
    ||||    
T  54881674 acaa 54881677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 55085378 - 55085266
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatc 138  Q
    |||||||| | |||||||||  |  |||||||||||||  |||||| |||||||| |||| |||| || ||| ||||||||||||| ||  |||  ||||    
T  55085378 gttttgctatgcacttggtttctaaattagatctagatt-gttgttattgcttgtagttaatttgattgttggttgtcattgatacttgctccatgaatc 55085280  T
Q  139 taaatttcattgat 152  Q
    ||||||||||||||    
T  55085279 taaatttcattgat 55085266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 6719766 - 6719866
Alignment:
Q  18 ttgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtca 117  Q
    |||||||||| ||  ||| | |||||||||| |||||||||  | ||||||||||||||  |||||| |||| ||||  | |||||||||||| ||||||    
T  6719766 ttgttctttggttttattgtggttttgctttgcacttggtttctagattagatctagatctgttgtttttgcctgtgactgttttggttattggttgtca 6719865  T
Q  118 t 118  Q
    |    
T  6719866 t 6719866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 47265212 - 47265252
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattaca 277  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  47265212 ttatcccactaagtgaggtcggctacatggatcaaattaca 47265252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 15665366 - 15665327
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  15665366 ttatcccactaagtggggtcagctacatggatcaaattac 15665327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 26024867 - 26024914
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    |||||||||||||| ||||| ||||||||||| |||||||| ||||||    
T  26024867 ttatcccactaagtgaggtcggctacatggataaaattacaccataat 26024914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 41964669 - 41964796
Alignment:
Q  63 gattagatctagataagttgttgttgcttgtggttattt-----tggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgag 157  Q
    ||||||||||||||  |||||| ||||||||||||||||     || || ||| ||| ||||||||| ||  |||| |||||||||||||||||| ||||    
T  41964669 gattagatctagatt-gttgttattgcttgtggttatttacatttgattgttggttgccattgatacttgctccacgaatctaaatttcattgatgtgag 41964767  T
Q  158 atttggagttt----ccgaattcacaata 182  Q
     |||||| |||    ||||||||||||||    
T  41964768 gtttggaatttgagaccgaattcacaata 41964796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 55008011 - 55007964
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    ||||||||||||||  |||| ||||||||||||||||||| |||||||    
T  55008011 ttatcccactaagtggggtcggctacatggatcaaattacgtcataat 55007964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 7947202 - 7947161
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacat 278  Q
    ||||||||||||||  |||| |||||||||||||||||||||    
T  7947202 ttatcccactaagtggggtcggctacatggatcaaattacat 7947161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 56375555 - 56375510
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcata 282  Q
    |||||||||||||| ||||| |||||||||||||||| || |||||    
T  56375555 ttatcccactaagtgaggtcggctacatggatcaaatgacgtcata 56375510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 4879126 - 4879166
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattaca 277  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
T  4879126 ttatcccagtaagtgaggtcggctacatggatcaaattaca 4879166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 12073635 - 12073737
Alignment:
Q  50 cacttggttgtttgattagatctagataagttgttgttgcttgtgg-ttatt--ttggttattgtttgtcattgatacatgtcccacaaatctaaatttc 146  Q
    |||||||||  | ||||||||||||||  ||||||||||||||||| |||||  |||||| ||  ||| ||||||||| ||  |||||||| ||||||||    
T  12073635 cacttggtttctagattagatctagatt-gttgttgttgcttgtggtttattccttggttgtttattgccattgatacttgctccacaaatttaaatttc 12073733  T
Q  147 attg 150  Q
    ||||    
T  12073734 attg 12073737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 23906314 - 23906350
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaat 273  Q
    ||||||||||||||  |||||||||||||||||||||    
T  23906314 ttatcccactaagtggggtcagctacatggatcaaat 23906350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 50862896 - 50862856
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattaca 277  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  50862896 ttatcccactaagtggggtcggctacatggatcaaattaca 50862856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 50967045 - 50967093
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataatt 285  Q
    |||| ||||||||| ||||| |||||||||||||||||||  |||||||    
T  50967045 ttattccactaagtgaggtcggctacatggatcaaattacgacataatt 50967093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 25073834 - 25073935
Alignment:
Q  79 gttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcac 178  Q
    |||||||||||||||||||||||| ||||||| || |||||||||| |||||||| |||||||| || ||| ||  |||||||||| || ||||||||||    
T  25073834 gttgttgttgcttgtggttatttttgttattgattatcattgatacttgtcccacgaatctaaactttattaatgcgagatttggaattgccgaattcac 25073933  T
Q  179 aa 180  Q
    ||    
T  25073934 aa 25073935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 5739946 - 5739845
Alignment:
Q  23 ctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgat 122  Q
    |||||||||| || | ||||||||||||||||||||| | |||||||| |||||| |||||||||| || || ||||||||||||||  || ||||||||    
T  5739946 ctttgattcagttgtggttttgctttacacttggttgctagattagatttagatatgttgttgttgattatgattattttggttattagttatcattgat 5739847  T
Q  123 ac 124  Q
    ||    
T  5739846 ac 5739845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 11660820 - 11660888
Alignment:
Q  24 tttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttg 92  Q
    |||||||||| | | ||||||||||||||||||||| | ||||||||||||||  ||||||||||||||    
T  11660820 tttgattcaaatgtggttttgctttacacttggttgctagattagatctagatctgttgttgttgcttg 11660888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 4386859 - 4386904
Alignment:
Q  135 aatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    |||||||||||||||||| |||||||||||||| || |||||||||    
T  4386859 aatctaaatttcattgatgtgagatttggagttaccaaattcacaa 4386904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 34522 - 34561
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  34522 ttatcccactaagtggggtcagctacatggatcaaattac 34561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 30031521 - 30031482
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  30031521 ttatcccactaagtgaggtcggctacatggatcaaattac 30031482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 26800884 - 26800946
Alignment:
Q  100 tttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttg 162  Q
    ||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||| |||| ||||    
T  26800884 tttggttattggttgccattgatacttgctccacgaatctaaatttcattgatgtgaggtttg 26800946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 608426 - 608381
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcata 282  Q
    ||||||||||||||| |||| |||||||||||||||| || |||||    
T  608426 ttatcccactaagtagggtcggctacatggatcaaatgacgtcata 608381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 655411 - 655448
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaatt 274  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  655411 ttatcccactaagtgaggtcacctacatggatcaaatt 655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 490256 - 490125
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatc 138  Q
    |||||||| |||||||||||| | |||||||||||||||  ||||||||||||| |||||||||||       ||| ||||||||| ||  |||||||||    
T  490256 gttttgctatacacttggttgctagattagatctagatatattgttgttgcttgcggttattttgg-------ttgccattgatacttgctccacaaatc 490164  T
Q  139 taaatttcattgatatgagatttggagtttccgaattca 177  Q
    |||||||||||||  ||||||| | |||| |||||||||    
T  490163 taaatttcattgacgtgagattagaagttaccgaattca 490125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 42261421 - 42261290
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatc 138  Q
    |||||||| |||||||||||| | |||||||||||||||  ||||||||||||| |||||||||||       ||| ||||||||| ||  |||||||||    
T  42261421 gttttgctatacacttggttgctagattagatctagatatattgttgttgcttgcggttattttgg-------ttgccattgatacttgctccacaaatc 42261329  T
Q  139 taaatttcattgatatgagatttggagtttccgaattca 177  Q
    |||||||||||||  ||||||| | |||| |||||||||    
T  42261328 taaatttcattgacgtgagattagaagttaccgaattca 42261290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 30217974 - 30217843
Alignment:
Q  46 tttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaattt 145  Q
    |||||||||||||  | |||| |||||||| | | | ||||||||||||||| |||||||||||| ||||| |||||  || | |||||||||||||||     
T  30217974 tttacacttggtttctagattggatctagaaatgattttgttgcttgtggttgttttggttattggttgtcgttgat--attttccacaaatctaaattc 30217877  T
Q  146 cattgatatgagatttggagtttccgaattcaca 179  Q
    ||||||| ||||||||| | || |||||||||||    
T  30217876 cattgatgtgagatttgaaattaccgaattcaca 30217843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 28197102 - 28197207
Alignment:
Q  18 ttgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtca 117  Q
    |||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||||| |  |||||||||||||  ||||||| |||||| ||| ||    
T  28197102 ttgttctttgattcaattgttggtttgctttacacttggttgctagataaaatctagatatgccgttgttgcttgtgactattttgattattggttgcca 28197201  T
Q  118 ttgata 123  Q
    ||||||    
T  28197202 ttgata 28197207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 33648443 - 33648546
Alignment:
Q  79 gttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagttt--ccgaattc 176  Q
    |||||||||||| || |||||||| ||||||| ||||||||||| | |   |||| |||||||||||||||||||||||||||||| |||  ||||||||    
T  33648443 gttgttgttgctcgtagttatttttgttattggttgtcattgattcttactccacgaatctaaatttcattgatatgagatttggattttgaccgaattc 33648542  T
Q  177 acaa 180  Q
    ||||    
T  33648543 acaa 33648546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 40935522 - 40935421
Alignment:
Q  79 gttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtttccgaattcac 178  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||| |   ||||| |||||| ||| |||| | ||| |||| ||||| ||||||||||    
T  40935522 gttgttgttacttgtggttattttggttattgattgttattgatactttctccacacatctaacttttattggtgtgacatttcgagttaccgaattcac 40935423  T
Q  179 aa 180  Q
    ||    
T  40935422 aa 40935421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 16676440 - 16676556
Alignment:
Q  18 ttgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtca 117  Q
    |||||||||| ||| ||| | |||||| ||||||||| |||| | ||||||||||||||| | ||||| | | |||||||||||| ||||||| | |||     
T  16676440 ttgttctttggttcgattgtggttttgatttacactttgttgctagattagatctagatatgatgttgctccctgtggttatttttgttattggtcgtcg 16676539  T
Q  118 ttgatacatgtcccaca 134  Q
    ||||||| || ||||||    
T  16676540 ttgatacttgccccaca 16676556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 7451374 - 7451498
Alignment:
Q  63 gattagatctagataagttgttgttgcttgtggttatttt-----ggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgag 157  Q
    ||||||||||||||  |||||| |||||||||||||||       |||||||| |||||||||| || ||  |||| |||||||||||||||||| ||||    
T  7451374 gattagatctagatt-gttgttattgcttgtggttattgacaagaggttattggttgtcattgaaacttgctccacgaatctaaatttcattgatgtgag 7451472  T
Q  158 atttggagtt---tccgaattcacaa 180  Q
    ||||||| ||   |||||||||||||    
T  7451473 atttggatttgagtccgaattcacaa 7451498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 10516766 - 10516805
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  10516766 ttatcccactaagtgagatcagctacatggatcaaattac 10516805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 24398351 - 24398422
Alignment:
Q  79 gttgttgttgcttgtggttattttg-gttattgtttgtcattgatacatgtcccacaaatctaaatttcatt 149  Q
    ||||||| ||||||||||||||||  ||||||| ||||||||||||| ||  | || |||||||||||||||    
T  24398351 gttgttgctgcttgtggttattttttgttattggttgtcattgatacttgctctacgaatctaaatttcatt 24398422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 18959176 - 18959138
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaatta 275  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  18959176 ttatcccactaagtggggtcagctacatggatcaaatta 18959138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 32004349 - 32004399
Alignment:
Q  79 gttgttgttgcttgtggttattttggttatt-gtttgtcattgatacatgt 128  Q
    |||||| |||||||||| ||||||||||||| ||||| |||||||||||||    
T  32004349 gttgttattgcttgtggctattttggttattagtttgccattgatacatgt 32004399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 3720435 - 3720479
Alignment:
Q  240 tcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    |||||||||||  |||| |||||||||||||||||||| ||||||    
T  3720435 tcccactaagtggggtcggctacatggatcaaattacaccataat 3720479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 4927701 - 4927623
Alignment:
Q  13 tgttattgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgctt 91  Q
    |||| |||||||||| ||||||||| ||||||||||||||||| |||||  |||||||||||||| | |||||||||||    
T  4927701 tgttgttgttctttggttcaattttggttttgctttacacttgattgttcaattagatctagatatgctgttgttgctt 4927623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 11137258 - 11137349
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcc 130  Q
    ||||| ||||| ||||| ||| | |||||||| |||||| ||| ||||||||||||||||||||| |||| | ||||||||||||| |||||    
T  11137258 gtttttctttatacttgattgctagattagatttagatatgttattgttgcttgtggttattttgattatcggttgtcattgatacttgtcc 11137349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 3772462 - 3772569
Alignment:
Q  79 gttgttgttgcttgtggttatttt-----ggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagtt-tccga 172  Q
    ||||||||||||||||||||||||     ||| |||| ||| ||||||||| ||  |||| |||||||||||||||||| |||| |||||| ||  ||||    
T  3772462 gttgttgttgcttgtggttattttcttttggtgattggttgccattgatacctgctccacgaatctaaatttcattgatgtgaggtttggaattgaccga 3772561  T
Q  173 attcacaa 180  Q
    ||||||||    
T  3772562 attcacaa 3772569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 7624906 - 7624812
Alignment:
Q  15 ttattgttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattg 110  Q
    ||||||||||||| ||| ||| | ||||| |||||||| |||||| | | ||||||||||||  |||||||||| ||| || ||||||||||||||    
T  7624906 ttattgttctttggttcgattgtggttttactttacacatggttgctag-ttagatctagattcgttgttgttgtttgcggctattttggttattg 7624812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 15691114 - 15691163
Alignment:
Q  130 ccacaaatctaaatttcattgatatgagatttggagtttccgaattcaca 179  Q
    |||| |||||||||||||||||| |||| ||||||||| |||||||||||    
T  15691114 ccacgaatctaaatttcattgatgtgaggtttggagttaccgaattcaca 15691163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 16035744 - 16035791
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    ||||||||||||||  ||||||||||||| |||||||||| |||||||    
T  16035744 ttatcccactaagtggggtcagctacatgaatcaaattacgtcataat 16035791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 30690000 - 30689953
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    ||||||||||||||  |||| ||||||||||||||||||| |||||||    
T  30690000 ttatcccactaagtggggtcggctacatggatcaaattacgtcataat 30689953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 45041333 - 45041372
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  45041333 ttatcccactaagtggggtcagctacatggatcaaattac 45041372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 45419500 - 45419453
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  45419500 ttatcccactaagtggggtcggctacatggatcaaattacaccataat 45419453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 10240436 - 10240486
Alignment:
Q  130 ccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    |||||||| |||||| ||||||| ||| |||||||||| ||||||||||||    
T  10240436 ccacaaatttaaattacattgatgtgaaatttggagttaccgaattcacaa 10240486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 40222018 - 40222100
Alignment:
Q  99 ttttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatttggagttt-ccgaattcacaa 180  Q
    |||||||| ||| ||| ||||||||| |   ||||||||||||||||||||||| |||  |||||| ||| ||||||||||||    
T  40222018 ttttggttgttggttgccattgatactttctccacaaatctaaatttcattgatgtgaagtttggaatttgccgaattcacaa 40222100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 6483557 - 6483525
Alignment:
Q  240 tcccactaagtaaggtcagctacatggatcaaa 272  Q
    |||||||||||| ||||||||||||||||||||    
T  6483557 tcccactaagtagggtcagctacatggatcaaa 6483525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 44047549 - 44047585
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaat 273  Q
    ||||||||||||||  |||||||||||||||||||||    
T  44047549 ttatcccactaagtggggtcagctacatggatcaaat 44047585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 1251 - 1204
Alignment:
Q  131 cacaaatctaaatttcattgatatgagatttggagtttccgaattcac 178  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1251 cacaaatcttaatttcattgatttgagatttggagtttccgaattcac 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 2390541 - 2390665
Alignment:
Q  63 gattagatctagataagttgttgttgcttgtggttattt-----tggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgag 157  Q
    ||||||||||||||  |||||| ||| ||||||||||||     ||||||||| ||||||||||||| ||  |||| |||||||||||||||||| ||||    
T  2390541 gattagatctagatt-gttgttattgattgtggttatttacatttggttattggttgtcattgatacttgctccactaatctaaatttcattgatgtgag 2390639  T
Q  158 atttggagtt---tccgaattcacaa 180  Q
     |||||| ||   |||||||||||||    
T  2390640 gtttggatttgaatccgaattcacaa 2390665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 20158688 - 20158727
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  20158688 ttatcccactaagtagggtcagctacatggatcaaattac 20158727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 1360109 - 1360048
Alignment:
Q  39 gttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttatt 100  Q
    |||||||||||||||| ||| || ||||||||||| |   ||||||||||||||||||||||    
T  1360109 gttttgctttacacttagtttttagattagatctaaaattgttgttgttgcttgtggttatt 1360048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 26639642 - 26639691
Alignment:
Q  131 cacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  26639642 cacatatctaaattttattgatgtgagatttggagttaccgaattcacaa 26639691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 45601741 - 45601696
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcata 282  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||    
T  45601741 ttatcccactaagtgagttcagctacatggatcaaattacaccata 45601696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 6688037 - 6687990
Alignment:
Q  40 ttttgctttacacttggttgtttgattagatctagataagttgttgtt 87  Q
    ||||||||| |||||||||||| |||| |||||||||| |||||||||    
T  6688037 ttttgctttccacttggttgttagattggatctagatatgttgttgtt 6687990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 9210721 - 9210760
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattac 276  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  9210721 ttatcccactaagtggggtcagctacatggatcaaattac 9210760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 22328315 - 22328185
Alignment:
Q  50 cacttggttgtttgattagatctagataagttgttgttgcttgtggttattttggttattgtttgtcattgatacatgtcccacaaatctaaatttcatt 149  Q
    |||||||||  | ||||||||||||||  ||| |||||  || ||||||||||  |||||  |||||||| |||| |   |||| |||||||||||||||    
T  22328315 cacttggtttctcgattagatctagatt-gtttttgttatttctggttattttaattatttgttgtcattaatacttactccacgaatctaaatttcatt 22328217  T
Q  150 gatatgagatttggagtt-tccgaattcacaa 180  Q
    ||| ||||||||||| ||  ||||||||||||    
T  22328216 gatgtgagatttggaattgaccgaattcacaa 22328185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 36101794 - 36101841
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcataat 284  Q
    ||||||||||||||  ||||| |||||||||||||||||| |||||||    
T  36101794 ttatcccactaagtggggtcaactacatggatcaaattacgtcataat 36101841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 1360028 - 1359978
Alignment:
Q  130 ccacaaatctaaatttcattgatatgagatttggagtttccgaattcacaa 180  Q
    ||||||||||||||||||||| | | ||||||| |||| ||||||||||||    
T  1360028 ccacaaatctaaatttcattggtgtaagatttgaagttaccgaattcacaa 1359978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 43363387 - 43363333
Alignment:
Q  56 gttgtttgattagatctagataagttgttgttgcttgtggttattttggttattg 110  Q
    |||||| ||||||||||||||  ||| |||||||||||||| ||||| |||||||    
T  43363387 gttgttagattagatctagatttgttattgttgcttgtggtcattttagttattg 43363333  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 2885739 - 2885784
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcata 282  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||    
T  2885739 ttatcccactaagtggggtcggctacatggatcaaattacaccata 2885784  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 3259250 - 3259342
Alignment:
Q  63 gattagatctagataagttgttgttgcttgtggttattt-----tggttattgtttgtcattgatacatgtcccacaaatctaaatttcattga 151  Q
    ||||||||||||||  |||||| ||||||||||||||||     ||||||||| ||||||||||||| ||  || | |||||||| ||||||||    
T  3259250 gattagatctagatt-gttgttattgcttgtggttatttacatttggttattggttgtcattgatacttgctccccgaatctaaagttcattga 3259342  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 7273365 - 7273320
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcata 282  Q
    ||||||||||||||  |||| ||||||||||||||||||| |||||    
T  7273365 ttatcccactaagtggggtcggctacatggatcaaattacgtcata 7273320  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 43491573 - 43491528
Alignment:
Q  237 ttatcccactaagtaaggtcagctacatggatcaaattacatcata 282  Q
    ||||||||||||||  |||| ||||||||||| |||||||||||||    
T  43491573 ttatcccactaagtggggtcggctacatggatgaaattacatcata 43491528  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 8359228 - 8359126
Alignment:
Q  63 gattagatctagataagttgttgttgcttgtggtta--ttttggttattgtttgtcattgatacatgtcccacaaatctaaatttcattgatatgagatt 160  Q
    ||||||||||||||  |||||||||||||||| ||   ||||| || ||| ||| ||||||||| ||  |||| |||||||||||||||| | |||| ||    
T  8359228 gattagatctagatt-gttgttgttgcttgtgatttacttttgattgttggttgccattgatacttgctccacgaatctaaatttcattggtgtgaggtt 8359130  T
Q  161 tgga 164  Q
    ||||    
T  8359129 tgga 8359126  T

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Target: scaffold0236 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 10703 - 10848
Alignment:
Q  21 ttctttgattcaatttttgttttgctttacacttggttgtttgattagatctagataagttgttgttgcttgtggttatttt-----ggttattgtttgt 115  Q
    ||||||||||  ||| | ||||| || |||||||| ||  | ||||| ||||||||  ||||||||||||||||||||||||     |||||| | ||||    
T  10703 ttctttgattagattgtagttttactatacacttgatttctagattaaatctagatt-gttgttgttgcttgtggttattttcttttggttatcggttgt 10801  T
Q  116 cattgatacatgtcccacaaatctaaatttcattgatatgagatttg 162  Q
    ||||||||| |   ||||||||||||||||||||||| |||| ||||    
T  10802 cattgatactttctccacaaatctaaatttcattgatgtgaggtttg 10848  T

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