View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9076_high_7 (Length: 418)
Name: NF9076_high_7
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 127 - 403
Target Start/End: Complemental strand, 8401562 - 8401287
Alignment:
| Q |
127 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
226 |
Q |
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| T |
8401562 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaaaaactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
8401464 |
T |
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| Q |
227 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctctt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8401463 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaataaatctccattttctctt |
8401364 |
T |
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| Q |
327 |
tgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctata |
403 |
Q |
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| T |
8401363 |
tgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctata |
8401287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 127 - 403
Target Start/End: Original strand, 8367848 - 8368123
Alignment:
| Q |
127 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
225 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || || | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8367848 |
atcacaattgaatcaaagaattgttaagttagatcaagaaaaaa-aactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
8367945 |
T |
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| Q |
226 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctct |
325 |
Q |
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| T |
8367946 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttctct |
8368045 |
T |
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| Q |
326 |
ttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctata |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368046 |
ttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctata |
8368123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 127 - 403
Target Start/End: Complemental strand, 8423144 - 8422864
Alignment:
| Q |
127 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaa-taaatacaaatc--ttagaaaagtttgctagcaaattcatcaactgtagttccct |
222 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||| | ||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
8423144 |
atcataattgaatcaaagaattgttaagttagatcaagaaaaaagtaaactaaaaacaattagaaaagcttgcttgcaaattcatcaactatagttccct |
8423045 |
T |
|
| Q |
223 |
caacacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttc |
322 |
Q |
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| T |
8423044 |
caacacgagagtaagctgattttatagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttc |
8422945 |
T |
|
| Q |
323 |
tctttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctata |
403 |
Q |
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| T |
8422944 |
tctttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctata |
8422864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 8401716 - 8401585
Alignment:
| Q |
2 |
ggctagttggtcactaatctaagatacgaaaaattttacttattcaaaaggcgcacaaattttaataatattggttggtgattatttgaatttaattttt |
101 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
8401716 |
ggctagttggtgactaatctaagatacgaaaaatcttacttattcaaaaggcgcacaaaatttaataatattggtcggtgattatttgaatttaattttt |
8401617 |
T |
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| Q |
102 |
ctacaatcacacaggcgcaaaaaatatcacaa |
133 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8401616 |
ctacaatcacacaggcgcaaaaaatatcacaa |
8401585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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