View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9076_low_13 (Length: 433)
Name: NF9076_low_13
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 38246915 - 38247331
Alignment:
| Q |
1 |
attgaatcacaaagtgggtatcttatccttgatgcatgcatcaaacaagtgaaagtgtaaaatcaacgttatcttggtatctagatgattgatttcttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38246915 |
attgaatcacaaagtgggtatcttatccttgatgcatgcatcaaacaagtgaaaatgtaaaatcaacgttatcttggtatctagatgattgatttcttta |
38247014 |
T |
|
| Q |
101 |
atattaatgattgatcaactaatttcgtctttgtccgcga-gtgctggtttgtaactatttcaagccttcaaactnnnnnnngaaacaaataggcactga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38247015 |
atattaatgattgatcaactaatttcgtctttgtccgcgaagtgctggtttgtaactatttcaagccttcaaactaaaaaaataaacaaataggcactga |
38247114 |
T |
|
| Q |
200 |
ctccttaaagtagtaatcaaaatgcaatggtcttctaaaagactaaaacaaatacttacatattcaagaaagtccaatcatacaaatacctcagtgaaat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38247115 |
ctccttaaagtagtaatcaaaatgcaatggtcttctaaaagactaaaacaaatacttacatattcaagaaagtccaatcatacaaatacctcagttaaat |
38247214 |
T |
|
| Q |
300 |
agtactaacacaacaaattattttattaattcattgttatcagttcggtccataaaacattacaagtcactccatttcaaattacataagaatgatcatc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38247215 |
agtactaacacaacaaattattttattaattcattgttatcagttcggtccataaaacattacaagtcactccatttcaaattacataagtatgatcatc |
38247314 |
T |
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| Q |
400 |
aacaccatcattgataa |
416 |
Q |
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||||||||||||||||| |
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| T |
38247315 |
aacaccatcattgataa |
38247331 |
T |
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