View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9076_low_14 (Length: 431)
Name: NF9076_low_14
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 82 - 333
Target Start/End: Complemental strand, 27563446 - 27563213
Alignment:
| Q |
82 |
taagatcatcacacgcaactcaacttgatgtcttctctccctgaaacatgcaatatggtaagaaactaagagattc-aacatacacactagaaatctaaa |
180 |
Q |
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|||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
27563446 |
taagatcatcacacataactcaagttgatatcttctctccctgaaacatgcaatatggtaagaaactagaagattcaaacatacacactagacatctaaa |
27563347 |
T |
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| Q |
181 |
cacaaaaaatgtgatatgcagactagtatcatgtttggcattttccatcttaatttcaagatcattcct-tttaataatacatttctgtaactgaagctc |
279 |
Q |
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| T |
27563346 |
tacaaaaaatgtgatatgcagactagcatcttgtttggccgtt--------------------attcctttttaataatacatttctgcaactgaagctc |
27563267 |
T |
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| Q |
280 |
gaggtcatcggtcatagtcagaattgtcaaggatacaccttacattatgagcag |
333 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| |||||| ||||| |
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| T |
27563266 |
gaggccatcggtcatagtcagaattgtcaaggatacgccttgcattatcagcag |
27563213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 27562454 - 27562368
Alignment:
| Q |
340 |
atgggaatgaattcctccaatgctgatgctatgaatggaagcttgtctgctgagaagcctgcagagagagccatgggtttgtctgtg |
426 |
Q |
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| T |
27562454 |
atgggaatgaattcctccaatgctgatgctatgaatggaagcttgtctgctgagaagcctgcagagagagccatggttttgtctgtg |
27562368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 85 - 265
Target Start/End: Complemental strand, 36672793 - 36672611
Alignment:
| Q |
85 |
gatcatcacacgcaactcaactt-gatgtcttctctccctgaaacatgcaatatggtaagaaactaagagattcaa-catacacactagaaatctaaaca |
182 |
Q |
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| T |
36672793 |
gatcatcacacgtaactcaactttgatacctattctcctttaaacatgcaatactgtaagaaactaggagattcaaacatagacacttcatatctaaata |
36672694 |
T |
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| Q |
183 |
caaaaaatgtgatatgcagactagtatcatgtttggcattttccatcttaatttcaagatcattccttttaataatacatttc |
265 |
Q |
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| T |
36672693 |
gataaaatgtgatatgcagaccaatatcttgtttggccttttccatcttaatttccatatcattcctttcaataatacatttc |
36672611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 27563973 - 27563906
Alignment:
| Q |
18 |
ttaactatatggaagagcttaagcaaatgttgtttatactgttgaagaagcatgtgattgatcttaag |
85 |
Q |
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| T |
27563973 |
ttaactatatggaagagcttaagcaaatgttgcttatattgttgaagaagcatgtgattgatcttaag |
27563906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 36669509 - 36669425
Alignment:
| Q |
340 |
atgggaatgaattcctccaatgctgatgctatgaatggaagcttgtctgctgagaagcctgcagagagagccatgggtttgtctg |
424 |
Q |
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| T |
36669509 |
atgggaatgaattcctccaatgctgatgcagtgaacggaaaagtgtctcctgagaagcctgcagagagagctatgggtttgtctg |
36669425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 314
Target Start/End: Original strand, 36668580 - 36668791
Alignment:
| Q |
106 |
ttgatgtcttctctccctgaaacatgcaatatggtaagaaactaagagattcaa-catacacactagaaatctaaacacaaaaaatgtgatatgcagact |
204 |
Q |
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||||| |||| |||||||||||||| ||||| |||||||| | ||||| ||| |||||||||| ||||||||| | ||||| ||||| ||||| |
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| T |
36668580 |
ttgatatcttttctccctgaaacatttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaataatgaaaatatgatacacagacc |
36668679 |
T |
|
| Q |
205 |
agtatcatgtttggcattttccatcttaatttcaagatcattccttttaataatacatttctgtaactgaagctcgaggtcatcggtc--atagtcagaa |
302 |
Q |
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| |||| |||||||| | ||||||||| ||||||||||||||||||| | ||||||| || || ||||||| || ||| ||||| ||| | |||||||| |
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| T |
36668680 |
aatatcttgtttggcctcttccatcttgatttcaagatcattcctttcattaatacacttttgcaactgaatcttgagctcatcagtcctagagtcagaa |
36668779 |
T |
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| Q |
303 |
ttgtcaaggata |
314 |
Q |
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||||| ||||| |
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| T |
36668780 |
atgtcatggata |
36668791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 26928990 - 26928917
Alignment:
| Q |
340 |
atgggaatgaattcctccaatgctgatgctatgaatggaagcttgtctgctgagaagcctgcagagagagccat |
413 |
Q |
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| T |
26928990 |
atgggaatgaattccaccaatgctgatgtagtgaatggaaacttgtctcctgagaagcctgcagagagagccat |
26928917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 314
Target Start/End: Original strand, 29411112 - 29411323
Alignment:
| Q |
106 |
ttgatgtcttctctccctgaaacatgcaatatggtaagaaactaagagattcaa-catacacactagaaatctaaacacaaaaaatgtgatatgcagact |
204 |
Q |
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|||||||||| ||||||||||| || || | ||||||||| | | ||| ||| |||||||| | |||| |||| | | |||||||| || |||||| |
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| T |
29411112 |
ttgatgtcttttctccctgaaaaatttaacagtgtaagaaacgaggggatccaaacatacacagtgcaaatataaatagagaaaatgtgctacgcagacc |
29411211 |
T |
|
| Q |
205 |
agtatcatgtttggcattttccatcttaatttcaagatcattccttttaataatacatttctgtaactgaagctcgaggtcatcggtc--atagtcagaa |
302 |
Q |
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|||||| |||||||| | ||||||| ||||||||||||||||| ||| ||||||||| ||||| || ||||||| ||| ||||| || | |||||||| |
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| T |
29411212 |
agtatcctgtttggcctcttccatcgtaatttcaagatcattcttttcaataatacacttctgcaattgaagcttgagctcatcaatcctagagtcagaa |
29411311 |
T |
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| Q |
303 |
ttgtcaaggata |
314 |
Q |
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|||||| ||||| |
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| T |
29411312 |
ttgtcatggata |
29411323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 29411998 - 29411916
Alignment:
| Q |
340 |
atgggaatgaattcctccaatgctgatgctatgaatggaagcttgtctgctgagaagcctgcagagagagccatgggtttgtc |
422 |
Q |
| |
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||||||||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||||| || |||||||||||||| |
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| T |
29411998 |
atgggaatgaattcctctaatgctgactcattgaatggaaacttgtctcctgagaagcctgcagatagggccatgggtttgtc |
29411916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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