View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9076_low_15 (Length: 419)
Name: NF9076_low_15
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 29473670 - 29474058
Alignment:
| Q |
18 |
ataatataccagctccttcagtagcaacattggcaatgatcaaagccaaaagaacaacaaaagaaatgattctataaacaagtaaccatgaaggatcaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||| || |
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| T |
29473670 |
ataatataccagctccttcagtagcaacattggcaataatcaaagccaaaagaacaacaaaagaaatgattctataaacaagaagccacgacggatctat |
29473769 |
T |
|
| Q |
118 |
tcccttgacacatgtgttccaagcttcatcttcatataacaatccatctgcttcttgatgattttcatctctctcagaagatctttgtttattgaatcct |
217 |
Q |
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|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29473770 |
ccctttaacgcatgtgttccaagcttcatcttcatataacaatccatctgcttcttgatgattttcatctctctcagaagatctttgtttattgaatcct |
29473869 |
T |
|
| Q |
218 |
tcaaacttgaatattaaatatgatgctagtgtcattgagatgaaaatccatagtgcacaaaagaagaatctccagttcaaccaataactcgacgcagttg |
317 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29473870 |
tcatacttgaatattaaataagatgctagtgtcattgagatgaaaatccatagtgcacaaaagaagaatctccagttcaaccaataactcgacgcagttg |
29473969 |
T |
|
| Q |
318 |
tatctgttgtcattgttggttgccatgtatggcttggtgtccatgttatgaaacccatatgtgtaatgtatatgctaatattattgatg |
406 |
Q |
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| T |
29473970 |
tatctgttgtcattgttggttgccatgtatggcttggtgtccatgttatgaaacccatatgtgtaatgtatatgctaatattcttgatg |
29474058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 29466868 - 29467175
Alignment:
| Q |
19 |
taatataccagctccttcagtagcaacattggcaatgatcaaagccaaaagaacaacaaaagaaatgattctataaacaagtaaccatgaaggatcaatt |
118 |
Q |
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|||||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29466868 |
taatatactagctcctgaaacagcaacattggcaatgatcaaagccaaaagaataacaaaagaaatgattctataaacaagtaaccatataggatcaatt |
29466967 |
T |
|
| Q |
119 |
cccttgacacatgtgttccaagcttcatcttcatataacaatccatctgcttcttgatgattttcatctctctcagaagatctttgtttattgaatcctt |
218 |
Q |
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|| || ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29466968 |
cctttaacacaagtattccaagcttcatcttcatataacaatccatcttcttcttgatgattttcatctctctcagaagatctttctttattgaatcctt |
29467067 |
T |
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| Q |
219 |
caaacttgaatattaaatatgatgctagtgtcattgagatgaaaatccatagtgcacaaaagaagaatctccagttcaaccaataactcgacgcagttgt |
318 |
Q |
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|| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| |
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| T |
29467068 |
catacttgaatattaaataagatgctagtatcattgaaatgaaaatccatagtgcacaaaagaagaatctccaattcaaccaataacttaatgcagttgt |
29467167 |
T |
|
| Q |
319 |
atctgttg |
326 |
Q |
| |
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|||||||| |
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| T |
29467168 |
atctgttg |
29467175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 14674445 - 14674556
Alignment:
| Q |
44 |
acattggcaatgatcaaagccaaaagaacaacaaaagaaatgattctataaacaagtaaccatgaaggatcaattcccttgacacatgtgttccaagctt |
143 |
Q |
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||||| ||| ||| |||| ||||||| |||| ||||||||| ||||| ||| ||| ||||| ||||| |||||| || |||||||| ||||| |||| |
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| T |
14674445 |
acattagcagtgagcaaacccaaaagcacaaaaaaagaaattattctgtaagaaagcaaccaattaggatgaattcctttaacacatgtattccatgctt |
14674544 |
T |
|
| Q |
144 |
catcttcatata |
155 |
Q |
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|||||||||||| |
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| T |
14674545 |
catcttcatata |
14674556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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