View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9076_low_18 (Length: 382)
Name: NF9076_low_18
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 33153237 - 33153590
Alignment:
| Q |
11 |
gaacctgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcatatatgttttatg |
110 |
Q |
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| T |
33153237 |
gaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcatatatgttttatg |
33153336 |
T |
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| Q |
111 |
aaacaatctatcttcatgcaccatcgtgttagttataaacaagttgaatttggaaccagggtaacacaagagaagaaatagctagtttgggaactgttct |
210 |
Q |
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| T |
33153337 |
aaacaatctatcttcatgcaccatcatgttagttataaacaagttgaatttggaaccagggtaacacaagagaagaaatagctagtttgggaactgttct |
33153436 |
T |
|
| Q |
211 |
acggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagctgaagagagaaaggcaagtagcttcttgt |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
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| T |
33153437 |
acggtgcatttcagattacaatattgaacgtgcggatttacttaacgagatccaaggtagaattattgatctgaagagaaaaaggcaagtagcttcttgt |
33153536 |
T |
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| Q |
311 |
attggaatttcgcaaatgaattaacaggattctgcataagttttggtggcactt |
364 |
Q |
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| T |
33153537 |
attggaatttcgcaaatgaattaacaggattctgcataagttttggtggcactt |
33153590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 39 - 317
Target Start/End: Original strand, 2363695 - 2363978
Alignment:
| Q |
39 |
atgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcatat-atgttttatgaaacaatctatcttcatgcaccatcgt |
137 |
Q |
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| T |
2363695 |
atgagagcagttgcaaggcaaccaactccatagaaatcaaggttctttttacttattcaaattatattttatgaaacattccatcttcatgcacctggat |
2363794 |
T |
|
| Q |
138 |
gttagttataaacaagttgaatttggaaccagggtaacacaagaga---agaaatagctagtttgggaactgttctacggtgcatttcagattacaatat |
234 |
Q |
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|| | ||||||| | || |||||| || |||| ||| ||| ||| |||||| |||||| ||||||||||||||| |||| |||||||| ||||||| |
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| T |
2363795 |
gtaatttataaatattttcaatttgaaatcaggataaggcaaaagaccaagaaattgctagtctgggaactgttctacagtgcctttcagataacaatat |
2363894 |
T |
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| Q |
235 |
tgaatgtgcggatttacttaacgagatccaaggtagaattcttgagctga--agagagaaaggcaagtagcttcttgtattggaa |
317 |
Q |
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| T |
2363895 |
ggaatccgtggatttactgaacgagattcacggtagaattcatgagctaaatagagagaaaggtgagtagctt-ttgtattggaa |
2363978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 39425214 - 39425098
Alignment:
| Q |
10 |
agaacctgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttc-tcttttcttattcatatatgtttta |
108 |
Q |
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| T |
39425214 |
agaacatgtgcagaatgcaaaactgatttctgagagtacttgcatgaaaaccaactccatcgaaattaaggttctttttttcttattca-atttatttta |
39425116 |
T |
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| Q |
109 |
tgaaacaatctatcttca |
126 |
Q |
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||||||| || ||||||| |
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| T |
39425115 |
tgaaacattccatcttca |
39425098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 39224870 - 39224914
Alignment:
| Q |
40 |
tgagagcaagtgcaagacaaccaactccattgaaataaaggttct |
84 |
Q |
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| T |
39224870 |
tgagagcagttgcaagaaaaccaactccattgaaatcaaggttct |
39224914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 51577017 - 51577103
Alignment:
| Q |
11 |
gaacctgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattca |
97 |
Q |
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|||| ||||||| | |||||||||| || ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||| |
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| T |
51577017 |
gaacttgtgcagtgggcaaaagtgatttctgagagcaactgcaagaaaaccaactccattgaaatcaaggttcgtatttcttattca |
51577103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 51577214 - 51577283
Alignment:
| Q |
213 |
ggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagct |
282 |
Q |
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| T |
51577214 |
ggtgcgtttcggataacaatatagaatatgtggatttacttgaccagattcaaggtagaattcttgagct |
51577283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 364
Target Start/End: Original strand, 25081080 - 25081114
Alignment:
| Q |
330 |
attaacaggattctgcataagttttggtggcactt |
364 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
25081080 |
attaacaggattctgcataagttttggtggcactt |
25081114 |
T |
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