View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9076_low_21 (Length: 357)
Name: NF9076_low_21
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_low_21 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 121 - 357
Target Start/End: Complemental strand, 35628050 - 35627814
Alignment:
| Q |
121 |
ctgagatttagtccaagtaatcgtcacatcacatgaaccgcgcttccttttataatcatgttttagctgttgggttaattgagtattattagtatctcgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35628050 |
ctgagatttagtccaagtaatcgtcacatcacatgaaccgcgcttccttttataatcatgttttagctgttgggttaattgagtagtattagtatctcgt |
35627951 |
T |
|
| Q |
221 |
tatttgtgtgtactaacttcagaagtaaatgagcatgctgatcttctccttagcgtgtgtttgttttgccagtgaaaacaaaccaaatgtacgtttagct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35627950 |
tatttgtgtgtactaacttcagaagtaaatgagcgtgctgatcttctccttagcgtgtgtttgttttgccagtgaaaacaaaccaaatgtacgtttagct |
35627851 |
T |
|
| Q |
321 |
caatgctacgatttgtagcttcattgaattcacggta |
357 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35627850 |
caatgctacaatttgtagcttcattaaattcacggta |
35627814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 35628215 - 35628114
Alignment:
| Q |
22 |
gactacaacagaaaagatattcaagtacttggaagaacgtggcatccttctgatgcaagaaaaggcatcaaggtattgttatgcttctatatattcagtc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35628215 |
gactacaacagaaaagatattcaagtacttggaagaacgtggcatccttctgatgcaagaaaaggcatcaaggtattgttacgcttctatatattcagtc |
35628116 |
T |
|
| Q |
122 |
tg |
123 |
Q |
| |
|
|| |
|
|
| T |
35628115 |
tg |
35628114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 8146261 - 8146181
Alignment:
| Q |
275 |
gtgtgtttgttttgccagtgaaaacaaaccaaatgtacgtttagctcaatgctacgatttgtagcttcattgaattcacgg |
355 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||| ||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
8146261 |
gtgtgtttgttttgccggtgaaaacaaaccaaactcacgtttaactccatgctacaatttgtagcttcatgaaattcacgg |
8146181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 24535157 - 24535074
Alignment:
| Q |
275 |
gtgtgtttgttttgccagtgaaaacaaa-ccaaatgtacgtttagctcaatgctacgatttgtagcttcattgaattcacggta |
357 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||| || |||| ||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
24535157 |
gtgtgtttgttttgtcggtgaaaacaaaaccaaacacacatttaactcaatgctactatttgtagcttcattaaattcacggta |
24535074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University