View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9076_low_23 (Length: 355)
Name: NF9076_low_23
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 74 - 339
Target Start/End: Complemental strand, 44883830 - 44883565
Alignment:
| Q |
74 |
aaataatcacatgtcaaagaatgttttgagcctagtatcatatctgtcgtcagaaatcacttcccagatttccttcaattctgcctcattaagtggatct |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44883830 |
aaataatcacatgtcaaagaatgttttgagcctagtatcatatctgtcgtcagaaatcgcttcccagatttccttcaactctgcctcattaagtggatct |
44883731 |
T |
|
| Q |
174 |
ccatcaatctccctcctcttagaaataacatttaaaagctcatctgcaaaggtcttagagttctccatgcctacatcaaaatccaaaaacatcctcacaa |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44883730 |
ccatcaatctccctcctcttagaaataacatttaaaagctcatctgcaaaggtcttagagttcttcatgcctacatcaaaatccaaaaacatcctcacag |
44883631 |
T |
|
| Q |
274 |
aatgcttacatagaccttgtttaaataatagtataagcccttatatataactagtgcggatggaga |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44883630 |
aatgcttacatagaccttgtttaaataatagtataagcccttatatataactagtgctgatggaga |
44883565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 44913429 - 44913288
Alignment:
| Q |
82 |
acatgtcaaagaatgttttgagcctagtatcatatctgtcgtcagaaatcacttcccagatttccttcaattctgcctcattaagtggatctccatcaat |
181 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| | || | |||||| ||| ||||||| |||||||||| || || ||||| || |||||||| ||| |
|
|
| T |
44913429 |
acatgtcaaagaatgttctgagcctagaatcaaaactattgtcagatatctggtcccagaaatccttcaattgtggcttattaattgaatctccatgaat |
44913330 |
T |
|
| Q |
182 |
ctccctcctcttagaaataacatttaaaagctcatctgcaaa |
223 |
Q |
| |
|
| ||||||| |||| ||| ||| || |||||| ||||||| |
|
|
| T |
44913329 |
attcctcctcctagacatagcatcaaatagctcacctgcaaa |
44913288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University