View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9076_low_26 (Length: 280)
Name: NF9076_low_26
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 13452472 - 13452745
Alignment:
| Q |
1 |
cgatgtcgattgtgagaatctctggtctcatgcatcttgacctcgccggaaaccaaatctccggtgagttaccttccgatataggaaaactccgaagact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13452472 |
cgatgtcgattgtgagaatctctggtctcatgcatcttgacctcgccggaaaccaaatctccggtgagttaccttccgatataggaaaactccgaagact |
13452571 |
T |
|
| Q |
101 |
aagccgcgcgttatttagccgaaaccaactcaccggttcaattcccgattcggttttgaaaatgaaccggcttgcggatttggatttatctatgaaccgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13452572 |
gagccgcgcgttatttagccgaaaccaactcaccggttcaattcccgattcggttttgaaaatgaaccggcttgcggatttggatttatctatgaaccgg |
13452671 |
T |
|
| Q |
201 |
ataaccggttcgattccggctcggatagggaaaatgcgggttttgtctactttgaaacttgatggtaactccat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13452672 |
ataaccggttcgattccggctcggatagggaaaatgcgggttttgtctactttgaaacttgatggtaactccat |
13452745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University