View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9076_low_3 (Length: 684)
Name: NF9076_low_3
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9076_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 8 - 667
Target Start/End: Original strand, 33594537 - 33595220
Alignment:
| Q |
8 |
tggagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33594537 |
tggagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaatt |
33594636 |
T |
|
| Q |
108 |
cttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33594637 |
cttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatcta |
33594736 |
T |
|
| Q |
208 |
gctgggttagtgtcaactcttgtagctagcaa---------------------agtcactgcagctatcggtcgaagaaattccatcgtgttgggtggtg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33594737 |
gctgggttagtgtcaactcttgtagctagcaaagtcactgcagctatcggcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgggtggtg |
33594836 |
T |
|
| Q |
287 |
ccatctttcttgctggtgctgctattaatggcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtttctctag |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33594837 |
ccatctttcttgctggtgctgctattaattgcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtttctctag |
33594936 |
T |
|
| Q |
387 |
tcaagtaagtgaacatatacaatcatacacatttgttaa---tagcagttcaacctcgtcaacaatataaaattttctattatacataagcaatgagacc |
483 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33594937 |
tcaagtaaatgaacatatacaatcatacacatttgttaatagtagtagttcaacctcgtcaacaatataaaattttctattatacataagcaatgagacc |
33595036 |
T |
|
| Q |
484 |
atttccccnnnnnnnagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaagataattgggatcaaatatagttgtct |
583 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33595037 |
atttcccctttttttagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaagataattgggatcaaatatagttgtat |
33595136 |
T |
|
| Q |
584 |
cgtggtcgctgggacataaaaataataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgccactaactttt |
667 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33595137 |
cgtggtcgctgggacataaaaatcataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgctactaactttt |
33595220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 8 - 667
Target Start/End: Original strand, 33601668 - 33602351
Alignment:
| Q |
8 |
tggagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33601668 |
tggagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaatt |
33601767 |
T |
|
| Q |
108 |
cttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33601768 |
cttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatcta |
33601867 |
T |
|
| Q |
208 |
gctgggttagtgtcaactcttgtagctagcaa---------------------agtcactgcagctatcggtcgaagaaattccatcgtgttgggtggtg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33601868 |
gctgggttagtgtcaactcttgtagctagcaaagtcactgcagctatcggcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgggtggtg |
33601967 |
T |
|
| Q |
287 |
ccatctttcttgctggtgctgctattaatggcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtttctctag |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33601968 |
ccatctttcttgctggtgctgctattaattgcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtttctctag |
33602067 |
T |
|
| Q |
387 |
tcaagtaagtgaacatatacaatcatacacatttgttaa---tagcagttcaacctcgtcaacaatataaaattttctattatacataagcaatgagacc |
483 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33602068 |
tcaagtaaatgaacatatacaatcatacacatttgttaatagtagtagttcaacctcgtcaacaatataaaattttctattatacataagcaatgagacc |
33602167 |
T |
|
| Q |
484 |
atttccccnnnnnnnagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaagataattgggatcaaatatagttgtct |
583 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33602168 |
atttcccctttttttagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaagataattgggatcaaatatagttgtat |
33602267 |
T |
|
| Q |
584 |
cgtggtcgctgggacataaaaataataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgccactaactttt |
667 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33602268 |
cgtggtcgctgggacataaaaatcataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgctactaactttt |
33602351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 8 - 667
Target Start/End: Original strand, 33587365 - 33588048
Alignment:
| Q |
8 |
tggagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33587365 |
tggagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaatt |
33587464 |
T |
|
| Q |
108 |
cttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33587465 |
cttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatcta |
33587564 |
T |
|
| Q |
208 |
gctgggttagtgtcaactcttgtagctagcaa---------------------agtcactgcagctatcggtcgaagaaattccatcgtgttgggtggtg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33587565 |
gctgggttagtgtcaactcttgtagctagcaaagtcactgcagctatcggcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgggtggtg |
33587664 |
T |
|
| Q |
287 |
ccatctttcttgctggtgctgctattaatggcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtttctctag |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33587665 |
ccatctttcttgctggtgctgctattaattgcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtttctctag |
33587764 |
T |
|
| Q |
387 |
tcaagtaagtgaacatatacaatcatacacatttgttaa---tagcagttcaacctcgtcaacaatataaaattttctattatacataagcaatgagacc |
483 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33587765 |
tcaagtaaatgaacatatacaatcatacacatttgttaatagtagtagttcaacctcgtcaacaatataaaattttctattatacataagcaatgagacc |
33587864 |
T |
|
| Q |
484 |
atttccccnnnnnnnagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaagataattgggatcaaatatagttgtct |
583 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
33587865 |
atttcccctttttttagtttaacttttagccgcaattttaaatagcaatgttgccgcgatgcttgttcttaaagagaattgtgatcaaatatagttgtat |
33587964 |
T |
|
| Q |
584 |
cgtggtcgctgggacataaaaataataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgccactaactttt |
667 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33587965 |
cgtggtcgctgggacataaaaatcataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgctactaactttt |
33588048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 66 - 396
Target Start/End: Original strand, 33608200 - 33608530
Alignment:
| Q |
66 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
165 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| | |||||||| |||||||||||||| |||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
33608200 |
ttcaggaggtgtcacaacgatggtgccgtttcttcaaaaattctttccagatattctaaggaaggcagctggtgctgaagtgaatatgtattgtgtgtat |
33608299 |
T |
|
| Q |
166 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagtcactgc-agctatcggtcgaaga |
264 |
Q |
| |
|
|| ||||| | ||||| || |||||||| ||||| ||||||||||| ||||||||| | |||| |||||||||||| || || | ||| ||||||||| |
|
|
| T |
33608300 |
gatagtcaaacattgacattatttacgtcttctctttatctagctggattagtgtcatcccttgcagctagcaaagttaccgcgtggtat-ggtcgaaga |
33608398 |
T |
|
| Q |
265 |
aattccatcgtgttgggtggtgccatctttcttgctggtgctgctattaatggcggttctgaaaatattgctatgctcatccttggtcgtattcttcttg |
364 |
Q |
| |
|
|| |||| | | |||||||| ||||| |||| |||| |||||||||||| ||||| ||||||||| | |||||||| | |||||| || |||| | |
|
|
| T |
33608399 |
aacgtcatcataataggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttctcg |
33608498 |
T |
|
| Q |
365 |
gttttggggtcggtttctctagtcaagtaagt |
396 |
Q |
| |
|
| |||||||| |||||| ||| |||||||||| |
|
|
| T |
33608499 |
ggtttggggttggtttcactaatcaagtaagt |
33608530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 66 - 396
Target Start/End: Original strand, 33615984 - 33616314
Alignment:
| Q |
66 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
165 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || | ||||| |||||||| ||||||||| |
|
|
| T |
33615984 |
ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat |
33616083 |
T |
|
| Q |
166 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagtcactgcagctatcggtcgaagaa |
265 |
Q |
| |
|
|| ||||| || ||||| | |||||||| ||||| ||||||||||| ||||||||| | ||| ||||||||||||||| || ||| ||||| |||| |
|
|
| T |
33616084 |
gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcacggcggcttatggtcggagaa |
33616183 |
T |
|
| Q |
266 |
attccatcgtgttgggtggtgccatctttcttgctggtgctgctattaatggcggttctgaaaatattgctatgctcatccttggtcgtattcttcttgg |
365 |
Q |
| |
|
| |||| | | || ||||| |||| |||| |||| || |||||||| ||||| |||||||| | |||||||| | |||||| |||||||||| |
|
|
| T |
33616184 |
acgtcatcataataggaggtgctctcttcattgccggtggcgccattaatggtggttcggaaaatatccccatgctcattttgggtcgtgttcttcttgg |
33616283 |
T |
|
| Q |
366 |
ttttggggtcggtttctctagtcaagtaagt |
396 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| |
|
|
| T |
33616284 |
gtttggggttggtttcactaatcaagtaagt |
33616314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 66 - 396
Target Start/End: Original strand, 33626481 - 33626811
Alignment:
| Q |
66 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
165 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||| || |||||||||||||| |||||||||||||||| ||||||| | || || ||||||||||||||| |
|
|
| T |
33626481 |
ttcaggaggtgtcacaactatgaagccatttcttaaaaaattcttcccagacattctaagaaaggcagttggtactaaggtgaacatgtactgtgtgtat |
33626580 |
T |
|
| Q |
166 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagtcactgcagctatcggtcgaagaa |
265 |
Q |
| |
|
|| ||||| || ||||| || || ||||| ||||| ||||||||||| || |||| | |||||||||||||||| || | | ||||| |||| |
|
|
| T |
33626581 |
gatagtcaaatattgacattattcacgtcttctctttatctagctggatttatgtcgtcacttgtagctagcaaagctacaacgatgtttggtcggagaa |
33626680 |
T |
|
| Q |
266 |
attccatcgtgttgggtggtgccatctttcttgctggtgctgctattaatggcggttctgaaaatattgctatgctcatccttggtcgtattcttcttgg |
365 |
Q |
| |
|
| |||| | |||||||| |||| |||||||||| ||| ||||| || |||||||||||||| ||||||| ||| | |||||| |||||||||| |
|
|
| T |
33626681 |
acgtcatcataatgggtggtattgtcttccttgctggtggtgcaattaacggaggttctgaaaatatctctatgcttatcttgggtcgtgttcttcttgg |
33626780 |
T |
|
| Q |
366 |
ttttggggtcggtttctctagtcaagtaagt |
396 |
Q |
| |
|
|| |||||||||||| ||| |||||||||| |
|
|
| T |
33626781 |
gttgggggtcggtttcactaatcaagtaagt |
33626811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 33621584 - 33621690
Alignment:
| Q |
290 |
tctttcttgctggtgctgctattaatggcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtttctctagtca |
389 |
Q |
| |
|
|||| |||||||||| ||| ||||| || |||||||||||||| |||||| ||| |||||||| ||||||||| || |||||||||||| ||| ||| |
|
|
| T |
33621584 |
tcttccttgctggtggtgccattaacggaggttctgaaaatatccatatgcttatctttggtcgtgctcttcttgggttgggggtcggtttcactaatca |
33621683 |
T |
|
| Q |
390 |
agtaagt |
396 |
Q |
| |
|
||||||| |
|
|
| T |
33621684 |
agtaagt |
33621690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 33621384 - 33621515
Alignment:
| Q |
90 |
gccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgttt |
189 |
Q |
| |
|
||||||||| || ||||| |||||| | ||||| ||||| |||||||||||| | || || ||||| ||||||||||| ||||| || ||||| || || |
|
|
| T |
33621384 |
gccatttcttaaaaaattattcccatacattcttagaaatgcagctggtactaaggtgaacatgtattgtgtgtatgatagtcaaatattgacattattc |
33621483 |
T |
|
| Q |
190 |
acgtcctctctgtatctagctgggttagtgtc |
221 |
Q |
| |
|
|| || || || ||||||||||| || ||||| |
|
|
| T |
33621484 |
acatcttcactttatctagctggatttgtgtc |
33621515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 33562050 - 33562111
Alignment:
| Q |
157 |
tgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagt |
218 |
Q |
| |
|
||||||||||| ||||| ||||| || || || |||||||| |||||||||||||||||||| |
|
|
| T |
33562050 |
tgtgtgtatgatagtcaaatgttaacattattcacgtcctcactgtatctagctgggttagt |
33562111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University