View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9076_low_42 (Length: 205)

Name: NF9076_low_42
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9076_low_42
NF9076_low_42
[»] chr4 (10 HSPs)
chr4 (15-205)||(2490638-2490828)
chr4 (35-205)||(2533843-2534013)
chr4 (18-205)||(5035135-5035322)
chr4 (28-139)||(2477091-2477202)
chr4 (35-139)||(5106725-5106829)
chr4 (35-205)||(2525285-2525455)
chr4 (16-205)||(2518744-2518933)
chr4 (19-119)||(5102520-5102620)
chr4 (19-119)||(2467029-2467129)
chr4 (16-59)||(2460105-2460148)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 2490638 - 2490828
Alignment:
Q  15 gatcactttggcctcttgaagaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2490638 gatcactttggcctcttgaagaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttg 2490737  T
Q  115 ggaagcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcttcgagtaaagggaaac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2490738 ggaagcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcgtcgagtaaagggaaac 2490828  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 2533843 - 2534013
Alignment:
Q  35 gaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttgggaagcaccaataattgatc 134  Q
    |||||||||||||||||||||||| ||||| |||||| | ||  | || |||| ||| |||||||||| ||||||||||||||||| |||| ||||||||    
T  2533843 gaaggtcacagttcttgcagagatttttaattgagtgctcactgacgatattatgagttaaagcaatcctgcggagtttgggaagcgccaagaattgatc 2533942  T
Q  135 atcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcttcgagtaaagggaaac 205  Q
    |||| | |||| | || |||| ||||||  |||   |||||| |||||||||||||| |||||||||||||    
T  2533943 atcactatctatcgcacaattatggggacaaccagagtcggtaaggatgagttcttcaagtaaagggaaac 2534013  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 5035135 - 5035322
Alignment:
Q  18 cactttggcctcttgaagaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttggga 117  Q
    ||||||| |||||||||||||||||||| ||||||||||||  |||| ||||||   ||| | || ||||  || |||||||||| ||||||||||||||    
T  5035135 cactttgacctcttgaagaaggtcacagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttggga 5035234  T
Q  118 agcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcttcgagtaaagggaaac 205  Q
    ||| | || |||||||||||| | ||||   || |||| ||||||  |||  | || || ||||| ||||||||||||||||||||||    
T  5035235 agcgctaagaattgatcatcactatctatagcacaattatggggacaaccagtatcagtaaggattagttcttcgagtaaagggaaac 5035322  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 2477091 - 2477202
Alignment:
Q  28 tcttgaagaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttgggaagcaccaata 127  Q
    |||||||||||||| ||||||||||||||||  | ||  ||  |   ||| ||||||||| |||||||||||||||||||||||||||||||| |||| |    
T  2477091 tcttgaagaaggtcgcagttcttgcagagatagtcaatagatcgtcgacccatgaaattaggagataaagcaatcttgcggagtttgggaagcgccaaca 2477190  T
Q  128 attgatcatcat 139  Q
    ||||||||||||    
T  2477191 attgatcatcat 2477202  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 5106829 - 5106725
Alignment:
Q  35 gaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttgggaagcaccaataattgatc 134  Q
    ||||||||||||||||||| ||||  ||||  || || ||||| | ||||||| | ||||| |||||||||||||||||||||||  |||||||||||||    
T  5106829 gaaggtcacagttcttgcaaagatggttaatagattggttacccaggaaattacgtgataacgcaatcttgcggagtttgggaagtgccaataattgatc 5106730  T
Q  135 atcat 139  Q
    |||||    
T  5106729 atcat 5106725  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 2525285 - 2525455
Alignment:
Q  35 gaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttgggaagcaccaataattgatc 134  Q
    |||||||||||||| |||||||||  ||||||||||| | |||   || | || ||| |||||||||| ||||||||||||||||| |||| ||||||||    
T  2525285 gaaggtcacagttcctgcagagattcttaactgagtgttgacccgcgatagtatgagttaaagcaatcctgcggagtttgggaagcgccaagaattgatc 2525384  T
Q  135 atcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcttcgagtaaagggaaac 205  Q
    |||| | |||| |||| | ||     ||  |||  ||||||| ||||||||||||||||||| ||||||||    
T  2525385 atcactatctatcacacagttactacgacaaccagtgtcggtaaggatgagttcttcgagtagagggaaac 2525455  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 2518744 - 2518933
Alignment:
Q  16 atcactttggcctcttgaagaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttgg 115  Q
    |||| |||| |||||  ||| |||| ||||||||||||| ||||| ||| |||| | | |||||| ||||||  |||||||||||||||||||||||| |    
T  2518744 atcaatttgacctctgtaaggaggtgacagttcttgcagtgatctataattgagcggtgaccaataaaattacaagataaagcaatcttgcggagtttag 2518843  T
Q  116 gaagcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcttcgagtaaagggaaac 205  Q
    ||||| |||| ||||||  |||| | |||| |||  |||  | || || |  | | ||||| ||||||||||||| ||||||||||||||    
T  2518844 gaagcgccaagaattgaaaatcaatatctatcaccaaatcattggtataaatggtatcggtaaggatgagttctttgagtaaagggaaac 2518933  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 5102620 - 5102520
Alignment:
Q  19 actttggcctcttgaagaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttgggaa 118  Q
    |||||| | ||||||||||||||||||||| |||| ||||  ||||  || ||  |||| ||||||||| |||||||| |||||||||||||||||||||    
T  5102620 actttgacatcttgaagaaggtcacagttcctgcaaagatggttaatagattgggtacctatgaaattacgagataaaacaatcttgcggagtttgggaa 5102521  T
Q  119 g 119  Q
    |    
T  5102520 g 5102520  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 2467029 - 2467129
Alignment:
Q  19 actttggcctcttgaagaaggtcacagttcttgcagagatctttaactgagtgattaccaatgaaattaagagataaagcaatcttgcggagtttgggaa 118  Q
    |||||| | |||||||||||| |||||||| |||||||||  ||||  || ||   |||||| |||||| ||||||||||||||||||||||||| ||||    
T  2467029 actttgacgtcttgaagaaggccacagttcctgcagagatagttaatagattggcaaccaataaaattacgagataaagcaatcttgcggagttttggaa 2467128  T
Q  119 g 119  Q
    |    
T  2467129 g 2467129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 2460105 - 2460148
Alignment:
Q  16 atcactttggcctcttgaagaaggtcacagttcttgcagagatc 59  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||    
T  2460105 atcactttgacctcttgaagaaggtcacaattcttgcaaagatc 2460148  T

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