View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9076_low_9 (Length: 535)

Name: NF9076_low_9
Description: NF9076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9076_low_9
NF9076_low_9
[»] chr2 (1 HSPs)
chr2 (16-518)||(2433305-2433808)
[»] chr6 (1 HSPs)
chr6 (17-518)||(12438179-12438681)
[»] chr5 (4 HSPs)
chr5 (18-518)||(41654373-41654871)
chr5 (18-518)||(41646838-41647336)
chr5 (63-518)||(41620697-41621150)
chr5 (130-440)||(41465642-41465953)
[»] chr1 (2 HSPs)
chr1 (116-170)||(12636975-12637029)
chr1 (116-271)||(12609879-12610035)
[»] chr8 (1 HSPs)
chr8 (362-516)||(5022259-5022413)
[»] chr3 (4 HSPs)
chr3 (116-170)||(23145894-23145948)
chr3 (130-223)||(22986265-22986359)
chr3 (116-170)||(23036144-23036198)
chr3 (116-168)||(23039015-23039067)


Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Complemental strand, 2433808 - 2433305
Alignment:
Q  16 acttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433808 acttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcag 2433709  T
Q  116 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcagg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2433708 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgtaatcaactagacaatccatgaacctctcagg 2433609  T
Q  215 ataaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2433608 ataaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccagatggtattgtgtatccattaatc 2433509  T
Q  315 tcacaagtttcaatacactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433508 tcacaagtttcaatacactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaa 2433409  T
Q  415 gatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagc 514  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433408 aatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagc 2433309  T
Q  515 ccat 518  Q
    ||||    
T  2433308 ccat 2433305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 518
Target Start/End: Original strand, 12438179 - 12438681
Alignment:
Q  17 cttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagc 116  Q
    |||||||||| || |||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| | |  |  ||| ||    
T  12438179 cttcagtcatgtctaaattttcatgactagttccagagggaagtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaacttcggc 12438278  T
Q  117 aaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactagacaatccatgaacctctcagga 215  Q
     ||   ||| || ||||| ||||| ||||| ||||||||||||||  |||| |||||||||||||||||||||| | ||||||| || || |||||||||    
T  12438279 gaacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacaatcaataaatctctcagga 12438378  T
Q  216 taaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatct 315  Q
    | |||||||||||||||  ||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||| | || |||| ||||||| |||| |     
T  12438379 ttaaacttttctccttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaacca 12438478  T
Q  316 cacaagtttcaatacactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaag 415  Q
    ||||| ||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |||||| |||||||||||    
T  12438479 cacaattttcaatacactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttaaatattttagttcttgaag 12438578  T
Q  416 atttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagcc 515  Q
    |||||||||||||| |||||| ||| ||||||  || || |||||||||||||||||||||||||  ||||| || ||||||| |||||||||||| |||    
T  12438579 atttatttcatcaacatatcccttgcttccaacaacatgcctaacttctgcttgagccttttttaatactcttggatttttcaacatttctgaaaaggcc 12438678  T
Q  516 cat 518  Q
    |||    
T  12438679 cat 12438681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 41654871 - 41654373
Alignment:
Q  18 ttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagca 117  Q
    ||||||||| || ||||||||||||||  ||||| |||| |||  |||||||||| | |||| ||| || |||||||||| ||||| | ||| | |||||    
T  41654871 ttcagtcatgtcaaaattttcatgagtggttccagaggggagtttccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagca 41654772  T
Q  118 aatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggat 216  Q
    || | |||||| ||||| |||||| |||||||||||||||||||| ||||||| ||||||||| || |||||| |  | |||||| ||||||||| ||||    
T  41654771 aaagagattccaggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccctctgaaatcaattgaagaatccaagaacctctctggat 41654672  T
Q  217 aaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatctc 316  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||||||||||| |||||    
T  41654671 aaaacttttctccttcaatccaatacttttggtctcttccaattgcccatgcattcacaaacacttgtgttccagctggtattgtgtatccatttatctc 41654572  T
Q  317 acaagtttcaatacactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaaga 416  Q
    ||||||||||||||||||||| || |  || | |||| |||| || |||| |||||| ||||||||||| | |||||||| |||||||||||||||||||    
T  41654571 acaagtttcaatacactctctaggaa--ag-acaggattaggaggatgcactcttaatgtttctttaataactgcttttagatatttcagttcttgaaga 41654475  T
Q  417 tttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagccc 516  Q
    | | ||||||||| ||||||| || | |||||  |||||||||||||| ||||||||||||| |  |||||||||||||||| ||||||||| |||||||    
T  41654474 tctttttcatcaacatatcctctgctaccaaaagcttgtctaacttcttcttgagcctttttcattactctagggtttttcagcatttctgagaaagccc 41654375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 41647336 - 41646838
Alignment:
Q  18 ttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagca 117  Q
    ||||||||| || ||||||||||||||  ||||| |||| |||  |||||||||| | |||| ||| || |||||||||| ||||| | ||| | |||||    
T  41647336 ttcagtcatgtcaaaattttcatgagtggttccagaggggagtttccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagca 41647237  T
Q  118 aatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggat 216  Q
    || | |||||| ||||| |||||| |||||||||||||||||||| ||||||| ||||||||| || ||| || | || |||||| ||||||||| ||||    
T  41647236 aaagagattccaggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccctctgaaattaattggagaatccaagaacctctctggat 41647137  T
Q  217 aaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatctc 316  Q
    ||||||||||||||||  ||||||| |||| ||||||||| |||||||||  ||||||||||||||||||||||| || ||||||||||||||| |||||    
T  41647136 aaaacttttctccttcaatccaatatttttcgtctcttccaattgcccatgaattcacaaacacttgtgttccagctggtattgtgtatccatttatctc 41647037  T
Q  317 acaagtttcaatacactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaaga 416  Q
    ||||||||||||||||||||| || |  || | |||| |||  |||||||||||||||||||||||||| | |||||||| | ||||||||| |||||||    
T  41647036 acaagtttcaatacactctctaggaa--ag-ataggattagaagggtgcaatcttaaggtttctttaataactgcttttagaaatttcagtttttgaaga 41646940  T
Q  417 tttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagccc 516  Q
    | | ||||||||| ||||||| || | |||||  |||||||||||||| ||||||||||||| |  |||||||||||||||| ||||||||| |||||||    
T  41646939 tctttttcatcaacatatcctctgctaccaaaagcttgtctaacttcttcttgagcctttttcattactctagggtttttcagcatttctgagaaagccc 41646840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 63 - 518
Target Start/End: Original strand, 41620697 - 41621150
Alignment:
Q  63 ccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagcaaatgtgattcctggacatattctccttcctgcaccaaaaggtatg 162  Q
    ||||||||||||| | ||||| || |||||||||| |||||   |||||  ||||||    || || ||||| |||||| |||||||||||||||||| |    
T  41620697 ccaatcaaaatagaataacaactgtgcaagaggaagttctatggtaggtgtagcaaacaaaatgccaggacacattctctttcctgcaccaaaaggtaag 41620796  T
Q  163 tactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctccttccctccaatacttttggtctcttcctattg 261  Q
     | ||||| || || ||||||||||||| | || |||||| ||||||||| ||||||||||| ||||| || |||||||  |||||||||||| | ||||    
T  41620797 aaatcaaaattggatcctttgtaatcaattggagaatccaagaacctctctggataaaacttgtctccatcactccaatttttttggtctcttgcaattg 41620896  T
Q  262 cccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatctcacaagtttcaatacactctcttggtagtagtagaggactaggtgg 361  Q
    |||||  |||||| ||||| ||||||||    | ||||||||||||||| |||||||||||||||  |||||||||   ||| |||| |||| |||| ||    
T  41620897 cccatgtattcactaacacgtgtgttccgcccggtattgtgtatccatttatctcacaagtttcagcacactctct---tagaagtaaaggattaggagg 41620993  T
Q  362 gtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgtttccaaagacttgtctaact 461  Q
     |||| ||| |||||||||||||| | |||||||| | |||||||||||| ||||| | ||||||||| ||||||| || |  ||||  | |||||||||    
T  41620994 atgcagtctgaaggtttctttaataactgcttttagaaatttcagttcttcaagatctttttcatcaacatatcctctgctaacaaaagcatgtctaact 41621093  T
Q  462 tctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagcccat 518  Q
    ||| |||||||| |||| |  | |||||||||||||| ||||||||| || ||||||    
T  41621094 tcttcttgagcccttttcaatattctagggtttttcagcatttctgagaaggcccat 41621150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 440
Target Start/End: Complemental strand, 41465953 - 41465642
Alignment:
Q  130 ggacatattctccttcctgcaccaaaaggtatgtactcaa-attagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctc 228  Q
    ||||| |||||||| || ||||| || |||||||| |||| |||||| ||||| ||||||| |  ||  ||||  || ||||| |||  |||||||||      
T  41465953 ggacaaattctcctaccagcaccgaacggtatgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaataaacttttccg 41465854  T
Q  229 cttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccag-atgatattgtgtatccattaatctcacaagtttcaa 327  Q
     ||| |||||||||||| | |||||||| || |||||| |||| || | |||||   |||| | ||| ||||||||| || |||||||||||||||||      
T  41465853 gttcactccaatactttggatctcttccaatcgcccatgcatttactatcactttgtttccggcatg-tattgtgtagcctttaatctcacaagtttctc 41465755  T
Q  328 tacactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatc 427  Q
    | || ||||| || || || |||||   ||| |||||||||||||  |||||||| || | |||||| | |||||||||| ||||||||  | |||||||    
T  41465754 tgcattctctagggagaagaagagggaaaggagggtgcaatcttagtgtttctttgatgactgctttcaaatatttcagtccttgaagagatgtttcatc 41465655  T
Q  428 aatatatcctttg 440  Q
    ||| |||||||||    
T  41465654 aatgtatcctttg 41465642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 12636975 - 12637029
Alignment:
Q  116 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 170  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||    
T  12636975 caaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaa 12637029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 271
Target Start/End: Original strand, 12609879 - 12610035
Alignment:
Q  116 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactaga-caatccatgaacctctcag 213  Q
    |||||||| | |||||||||||||| ||||| |||||||| || |||||||| ||||||  ||||||||| |||| |||| | | | ||||| ||||| |    
T  12609879 caaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaa-tagagctaccgatgaatctctccg 12609977  T
Q  214 gataaaacttttctccttccctccaatacttttggtctcttcctattgcccatccatt 271  Q
    |||||||||| |||  |||  |||| |||||| | |||||||| || |||||| ||||    
T  12609978 gataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcatt 12610035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 516
Target Start/End: Original strand, 5022259 - 5022413
Alignment:
Q  362 gtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgtttccaaagacttgtctaact 461  Q
    ||||| |||||||||||||||||| | | |||||| | |||||| |||||||||||  | |||||||| ||||||| |    | ||| || |||||||||    
T  5022259 gtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcctgttccactaaaaacctgtctaact 5022358  T
Q  462 tctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagccc 516  Q
    ||| |||||||| |  | || ||||| |||||| ||| || |||||| |||||||    
T  5022359 tcttcttgagccctaatcagtactcttgggtttctcagcaattctgagaaagccc 5022413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 23145894 - 23145948
Alignment:
Q  116 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 170  Q
    |||||||| | |||||||||||||| ||||| ||||||||||| |||||||||||    
T  23145894 caaatgtgctccctggacatattcttcttccagcaccaaaaggaatgtactcaaa 23145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 22986265 - 22986359
Alignment:
Q  130 ggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactag-acaatccatgaacctctcaggataaaactt 223  Q
    ||||| ||||||||||| |||||||| || |||||||| |||||||  |||||| |||||| ||| || ||| || ||||||||||||||||||||    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaa-tagaactatcaataaacctctcaggataaaactt 22986359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 23036144 - 23036198
Alignment:
Q  116 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 170  Q
    |||||||| | ||||| |||||||| ||||| ||||||||||| |||||||||||    
T  23036144 caaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcaaa 23036198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 23039015 - 23039067
Alignment:
Q  116 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactca 168  Q
    |||||||| | ||||| |||||||| ||||| ||||||||||| |||||||||    
T  23039015 caaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactca 23039067  T

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