View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9077_high_26 (Length: 326)
Name: NF9077_high_26
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_high_26 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 36081877 - 36082200
Alignment:
| Q |
13 |
tttggtgtttttcatcacattcatttcatcaaataggcttaaaattcactctattttggtcaaataagaggtaaagcttactaccttcgttaacatttca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36081877 |
tttggtgtttttcatcacattcatttcatcaaataggcttaaaattcactctattttggtcaaataagaggtaaagcttactaccttcgttaacatttca |
36081976 |
T |
|
| Q |
113 |
ttggtttggaggaacatttgtctctcgttcattgaggggcctaaaaagaaatattcacg----------tggcttcattgggttcactcttcttgggctg |
202 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
36081977 |
ttgggttggaggaacatttgcctctcgttcattgaggggcctaaaaagaaatcttcacgtgttattgcatggcttcattgggtccactcttcttgggctg |
36082076 |
T |
|
| Q |
203 |
catctttggcccattaatcccatatggctctgaatgttaacttttctcaactctcaaattattaagagattatttttctgttcacatgtccgctttcaat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||| ||| |
|
|
| T |
36082077 |
catctttggcccattaatcccatatggctcttaatgttaacttttctcaactctcaaattattaagagatcatttttgtgttcacatgtacacttttaat |
36082176 |
T |
|
| Q |
303 |
agtcgattttgtaatacatttata |
326 |
Q |
| |
|
|| ||||||||||||||| ||||| |
|
|
| T |
36082177 |
aggcgattttgtaatacagttata |
36082200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University