View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9077_high_3 (Length: 663)

Name: NF9077_high_3
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9077_high_3
NF9077_high_3
[»] chr7 (1 HSPs)
chr7 (1-640)||(3979179-3979816)


Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 3979816 - 3979179
Alignment:
Q  1 aaactgcgacaagccnnnnnnntgtaagacatttagcgaaaaatgcaatggttttgatnnnnnnntgttgcgtaggcttgttatgcatatccggtctatg 100  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  3979816 aaactgcgacaagccaaaaaaatgtaagacatttagcgaaaaatgcaatggttttgataaaaaa-tgttgcgtaggcttgttatgcatatccggtctatg 3979718  T
Q  101 tcggttcccaaaatctccaccactgcgactataaatagtggtggatatcttggcgagcccaacaccggatagaaataagttaaggtaagagtaaaacatt 200  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3979717 tcggttcccaacatctccaccactgcgactataaatagtggcggatatcttggcgagcccaacaccggatagaaataagttacggtgagagtaaaacatt 3979618  T
Q  201 tatttgcggggaaaaacttgtaataacagtttgcatctacaaactgtgtagtggtttgtgaccttcattttaagttttgttgtttgtgtaatgattgggg 300  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||| |||||||||||||    
T  3979617 tatttgtggggaaaaacttgtaataagagtttgcatctacaaactttgtagtggtttatgatctgcattttaagttttgttgtttgggtaatgattgggg 3979518  T
Q  301 atagtttatta--tcttcttgtttccaagttcatttggacttttgttatgctaataataaagtgattagtttcttactttttggtttaatatttccattt 398  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3979517 atagtttattatctcttcttgtttccaagttcatttggacttttgttatgctaataataaagtgattagtttcttaatttttggtttaatatttccattt 3979418  T
Q  399 tgatgttgtgttgcaaacttaacgtgttttctttcttgaatctattttttattagaaaattggcctaaccnnnnnnnngt-ttctctaaagaattcaaaa 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||          | |||||||||||||| || |    
T  3979417 tgatgttgtgttgcaaacttaacgtgttttctttcttgaatctatttcttattagaaaattggcctaactttttttttttgttctctaaagaatttaata 3979318  T
Q  498 tccagtttatccttccacacagaaaattgtccaaacaagtatatgttttaatgggaatattcatatgagtatttttggtgaattaataagtgtgacttat 597  Q
    | ||||||||||||||||||| |||||||||||||  ||||||| ||||| |||||||||||  ||||||||||||||||||| |||||  |||||||||    
T  3979317 ttcagtttatccttccacacataaaattgtccaaaagagtatatattttactgggaatattc--atgagtatttttggtgaataaataa--gtgacttat 3979222  T
Q  598 atgttcacaagtactagctcaaccgacaaaatgtcaaaactgt 640  Q
    |||||||||||| |||||||||| || ||||||||||||||||    
T  3979221 atgttcacaagtgctagctcaactgataaaatgtcaaaactgt 3979179  T

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