View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_high_36 (Length: 206)
Name: NF9077_high_36
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_high_36 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 35559312 - 35559517
Alignment:
| Q |
1 |
atccagaacataaatactgagattgaggatacataccacattcactacaagaagattgaacacaaatccctggtagaataggtggcaaaggaagctgaaa |
100 |
Q |
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| T |
35559312 |
atccagaacataaatactgagattgaggatacataccacattcactacaagaagattgaacacaaatccctggtagaataggtggcaaaggaagctgaaa |
35559411 |
T |
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| Q |
101 |
tgttgaaccattccaaccaggaccccaacaaacaacagaaaaattgtttgttgtcaatccacaagtaaaattggaagcagaaacaataacctcaaaagaa |
200 |
Q |
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| T |
35559412 |
agttgaaccattccaactaggaccccaacaaacaacagaaaaattgtttgttgtcaatccacaagtaaaattggaagcagaaacaataacctcaaaagaa |
35559511 |
T |
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| Q |
201 |
acattt |
206 |
Q |
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|||||| |
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| T |
35559512 |
acattt |
35559517 |
T |
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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 31756209 - 31756298
Alignment:
| Q |
113 |
ccaaccaggaccccaacaaacaacagaaaaattgtttgttgtcaatccacaagtaaaattggaagcagaaacaataacctcaaaagaaac |
202 |
Q |
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| T |
31756209 |
ccaaccaggtccccaacaaacaacagaaaaattggttgttgtcaaaccacaagtaaaattagaaccagaaacaattaactcaaaagaaac |
31756298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 31756110 - 31756149
Alignment:
| Q |
26 |
aggatacataccacattcactacaagaagattgaacacaa |
65 |
Q |
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| T |
31756110 |
aggatatataccacactcactacaagaagattgaacacaa |
31756149 |
T |
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