View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9077_low_1 (Length: 939)
Name: NF9077_low_1
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_1 |
 | |
|
| [»] scaffold0466 (4 HSPs) |
| | |
|
| [»] scaffold1041 (5 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 497
Target Start/End: Complemental strand, 25359308 - 25358820
Alignment:
| Q |
11 |
gaagcagagatcataagattattttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgag |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25359308 |
gaagcagagatcataagatt-ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgag |
25359210 |
T |
|
| Q |
107 |
gatatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| |
|
|
| T |
25359209 |
gatatgaattaactaccaaaataattgttggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcac |
25359110 |
T |
|
| Q |
207 |
aagatgcatagagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25359109 |
aagatgcatagagtggaagaaattctagaatatcacacttgaggg-tcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagct |
25359011 |
T |
|
| Q |
307 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25359010 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacatcaacaagatataaattagtcgagatgtggtcttcat |
25358911 |
T |
|
| Q |
407 |
cgaagaaggagagtgagacgttattactcactaaaaggaatacggtttccttccagaatttgaagaagaaaaatttagagaagttgaacaa |
497 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25358910 |
cgaagaaggaaagtgagatgttattactcactaaaaggaatacggtttccttccagaatttgaagaagaaaaatttagagaagttgaacaa |
25358820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 25399341 - 25398988
Alignment:
| Q |
11 |
gaagcagagatcataagattattttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgag |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25399341 |
gaagcagagatcataagatt-ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgag |
25399243 |
T |
|
| Q |
107 |
gatatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccac |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| |
|
|
| T |
25399242 |
gatatgaattaactaccaaaataattattggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcac |
25399143 |
T |
|
| Q |
207 |
aagatgcatagagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25399142 |
aagatgcatagagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgac------- |
25399051 |
T |
|
| Q |
307 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaaca |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25399050 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaaca |
25398988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 591 - 921
Target Start/End: Complemental strand, 25617938 - 25617604
Alignment:
| Q |
591 |
gatgacttaaagatatctatgagggaatggataatccacattattatgtctcttttcaaattatgcatacacaaacttagaagcagctacaaaagatgca |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25617938 |
gatgacttaaagatatctatgagggaatggatacttcgcattattatgtctctcttcaaattatgcatacacaaacttagaagcagctacaaaagatgca |
25617839 |
T |
|
| Q |
691 |
atggataaagaaattaaagacagagaaaagaatagaacacataaactcgacaaccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatg |
790 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25617838 |
gtggataaagaaattaaagacacagaaaagaatagagcacataaactcgacacccttctaaaaaagcataaggctaccaatttctagaaagtgtgcaatg |
25617739 |
T |
|
| Q |
791 |
aaggacacaaggaaagaatagttgcaaaaggctacac-------tgaaaagattgattgaaatatatatagtattttttgcaagtcgctcatcaaa-tta |
882 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25617738 |
aaggacacaaggaaagaatagttgcaaaaggctacactgaagtctgaaaagattgattgaa----atatagtattttttgcaagtcgctcatcaaattta |
25617643 |
T |
|
| Q |
883 |
ccgtaagaatagtactctcacaagttgaaaaacacgagt |
921 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25617642 |
ccgtaagaatagtactctcacaagttgaaaaacacgagt |
25617604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 117 - 384
Target Start/End: Complemental strand, 25650968 - 25650704
Alignment:
| Q |
117 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
216 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
25650968 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaagatgcata |
25650869 |
T |
|
| Q |
217 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
25650868 |
gagtggaagaaattctagaatatcacacttga-gggtcgcatatgttcatattttggacgataagaaagccaaacttgacgaca--agctagaaattcaa |
25650772 |
T |
|
| Q |
317 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaa |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
25650771 |
ctttgttggttatcatcaaagttcaaagggaatcatgttttaaaaaatgaacaacaacaagatataaa |
25650704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 117 - 358
Target Start/End: Complemental strand, 25618243 - 25618003
Alignment:
| Q |
117 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
216 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
25618243 |
aactaccaaaataattgtgggtttaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaagatgcata |
25618144 |
T |
|
| Q |
217 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25618143 |
gagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaa |
25618045 |
T |
|
| Q |
317 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtc |
358 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25618044 |
cttttttggttatcatcaaagttctaagggaatcatgttgtc |
25618003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 307 - 497
Target Start/End: Complemental strand, 25392329 - 25392139
Alignment:
| Q |
307 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25392329 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcat |
25392230 |
T |
|
| Q |
407 |
cgaagaaggagagtgagacgttattactcactaaaaggaatacggtttccttccagaatttgaagaagaaaaatttagagaagttgaacaa |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25392229 |
cgaagaaggagagtgagacgttattactcaccaaaaggaatacggttttcttccagaatttgaagaagaaaaatttagagaagttgaacaa |
25392139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 730 - 921
Target Start/End: Complemental strand, 25391921 - 25391734
Alignment:
| Q |
730 |
cataaactcgacaaccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactg |
829 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25391921 |
cataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactt |
25391822 |
T |
|
| Q |
830 |
aaaagattgattgaaatatatatagtattttttgcaagtcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagt |
921 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25391821 |
gaaagattgattgaaa----tatagtatttttcgcaagtctctcatcaaaataccgtaagaatagtactctcacaagttgaaaaacacgagt |
25391734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 542 - 687
Target Start/End: Complemental strand, 25392092 - 25391944
Alignment:
| Q |
542 |
cacatgtagtattcataccactatgacaacacagaggtcttatcacctcgatgacttaaagatatctatgagggaatggataatcc--acatta-ttatg |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
25392092 |
cacatgtagtattcataccactatgacaacacagagctcttatcaccttgatgacttaaagatatctatgagggaatggataatccatacattatttatg |
25391993 |
T |
|
| Q |
639 |
tctcttttcaaattatgcatacacaaacttagaagcagctacaaaagat |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25391992 |
tctcttttcaaattatgcatacacaaacttagaagcagctacaaaagat |
25391944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 777 - 921
Target Start/End: Complemental strand, 25494967 - 25494827
Alignment:
| Q |
777 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatatatagtattttttgcaagtcgctcatc |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
25494967 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaa----atttagtatttttcgcaagtcgctcatc |
25494872 |
T |
|
| Q |
877 |
aaattaccgtaagaatagtactctcacaagttgaaaaacacgagt |
921 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||||| |||| |
|
|
| T |
25494871 |
aaattaccataagaatagtaatctcacaaattgaaaaacatgagt |
25494827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 640 - 756
Target Start/End: Complemental strand, 25650544 - 25650413
Alignment:
| Q |
640 |
ctcttttcaaattatgcatacacaaacttagaagcagctacaaaagat---------------gcaatggataaagaaattaaagacagagaaaagaata |
724 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25650544 |
ctctcttcaaattatgcatacacaaacttagaagcagctacaaaagataagaaacaaaaagatgcaatggataaagaaattaaagacatagaaaagaata |
25650445 |
T |
|
| Q |
725 |
gaacacataaactcgacaaccttctaaaaaag |
756 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
|
|
| T |
25650444 |
gaacacataaactcgacacccttctaaaaaag |
25650413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 25495136 - 25495042
Alignment:
| Q |
117 |
aactaccaaaataattgttga-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaaga |
210 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
25495136 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
25495042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 438 - 519
Target Start/End: Complemental strand, 25650707 - 25650621
Alignment:
| Q |
438 |
taaaaggaatacggtttccttccagaatttgaagaagaaaaatttagagaagttgaac-----aagtgtcacacttaccaaaattgt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25650707 |
taaaaggaatacggtttccttccagaatttgaagaagaaaaatttagagaagttgaacaagctaagtgtcacacttaccaaaattgt |
25650621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 25495366 - 25495282
Alignment:
| Q |
32 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
120 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495366 |
ttttttcaagaataacaaaggtacaatcgagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
25495282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 25651318 - 25651231
Alignment:
| Q |
29 |
ttattttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
120 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
25651318 |
ttattttttcaagaataacaaaggtactatcgagagaaccagcttgcaga----taaaagctatatggacgtaccgaagatgtgaattaact |
25651231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 868 - 921
Target Start/End: Complemental strand, 25678386 - 25678333
Alignment:
| Q |
868 |
tcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagt |
921 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
25678386 |
tcgctcatcaaattaccgtaagaatagtactttcacaagttgaaaaacatgagt |
25678333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 876 - 921
Target Start/End: Complemental strand, 25358747 - 25358702
Alignment:
| Q |
876 |
caaattaccgtaagaatagtactctcacaagttgaaaaacacgagt |
921 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25358747 |
caaaataccgtaagaatagtactctcacaagttgaaaaacacgagt |
25358702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 472 - 504
Target Start/End: Complemental strand, 25617984 - 25617952
Alignment:
| Q |
472 |
aagaaaaatttagagaagttgaacaagtgtcac |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
25617984 |
aagaaaaatttagagaagttgaacaagtgtcac |
25617952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 117 - 519
Target Start/End: Original strand, 6221 - 6619
Alignment:
| Q |
117 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
216 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
6221 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaagatgcata |
6320 |
T |
|
| Q |
217 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6321 |
gagtggaagaaattctagattatcacacttgaggg-tcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaa |
6419 |
T |
|
| Q |
317 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcgaagaagga |
416 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6420 |
ccttgttggttatcatcaaagttcatagggaatcatgttgtcaaaaatgaaca---acaagatataaattagtcgagatgtggtcttcatcgaagaagga |
6516 |
T |
|
| Q |
417 |
gagtgagacgttattactcactaaaaggaatacggtttccttccagaatttgaagaagaaaaatttagagaagttgaacaagtgtcacacttaccaaaat |
516 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6517 |
gagcgagacgttattactcactcaaaggaatacggtttccttcaagaatttgaagaagaaaaatttagagaagttgaacaagtgtcacacttaccaaaat |
6616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 610 - 788
Target Start/End: Original strand, 7737 - 7930
Alignment:
| Q |
610 |
tgagggaatggataatccacattattatgtctcttttcaaattatgcatacacaaacttagaagcagctacaaaa---------------gatgcaatgg |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7737 |
tgagggaatggataatccacattattatgtctctcttcaaattatgcatacacaaacttagaagcagctacaaaagataagaaacaaaaagatgcaatgg |
7836 |
T |
|
| Q |
695 |
ataaagaaattaaagacagagaaaagaatagaacacataaactcgacaaccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaa |
788 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7837 |
ataaagaaattaaagacacagaaaagaatagaacacataaactcgacacccttctaaaaaagcctaaggctaccaatgtctagaaagtgtgcaa |
7930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 786 - 921
Target Start/End: Original strand, 7955 - 8086
Alignment:
| Q |
786 |
caatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatatatagtattttttgcaagtcgctcatcaaattaccg |
885 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||| ||||||||| |||| |
|
|
| T |
7955 |
caatgaaggacacaaggaaagaatagttgcaaaaggctaagctgaaaatattgattgaaatat----agtatttttcgcaagtcactcatcaaaatacca |
8050 |
T |
|
| Q |
886 |
taagaatagtactctcacaagttgaaaaacacgagt |
921 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8051 |
taagaatagtactctcacaagttgaaaaacacgagt |
8086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 5996 - 6070
Alignment:
| Q |
42 |
aataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
120 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5996 |
aataacaaaggtaaaatcgagagaaccagcttacagataa----aagctatatggacgtaccgaggatatgaattaact |
6070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 718 - 921
Target Start/End: Original strand, 811 - 1010
Alignment:
| Q |
718 |
aagaatagaacacataaactcgacaaccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaa |
817 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
811 |
aagaatagaacacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaa |
910 |
T |
|
| Q |
818 |
aaggctacactgaaaagattgattgaaatatatatagtattttttgcaagtcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacac |
917 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
911 |
aaggctacactgaaaagattgattgaa----atatagtatttttcgcaagtcgctcatcaaaataccgtaagaatagtactctcacgagttgaaaaacac |
1006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 320 - 426
Alignment:
| Q |
11 |
gaagcagagatcataagattatttt-ttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggat |
109 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
320 |
gaagcagagatcataagtttttttttttcaagaataacaaagctattatggagagaaccagcttgcaga----taaaagctatatggacgtaccgaggat |
415 |
T |
|
| Q |
110 |
atgaattaact |
120 |
Q |
| |
|
||| ||||||| |
|
|
| T |
416 |
atggattaact |
426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 542 - 604
Alignment:
| Q |
346 |
gaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
542 |
gaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcg |
604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 466 - 517
Target Start/End: Original strand, 605 - 656
Alignment:
| Q |
466 |
ttgaagaagaaaaatttagagaagttgaacaagtgtcacacttaccaaaatt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
605 |
ttgaagaagaaaaatttagagaagttgaacaagtgtcacgcttaccaaaatt |
656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 582 - 643
Target Start/End: Original strand, 708 - 778
Alignment:
| Q |
582 |
tatcacctcgatgacttaaagatatctatgagggaat---------ggataatccacattattatgtctct |
643 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
708 |
tatcacctcgatgacttaaagatctctatgaggaaattgaggaaatggataatccacattattatgtctct |
778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 499
Target Start/End: Original strand, 32973722 - 32973838
Alignment:
| Q |
383 |
aattagtcgagatgtggtcttcatcgaagaaggagagtgagacgttattactcactaaaaggaatacggtttccttccagaatttgaagaagaaaaattt |
482 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||| | || || ||| |||||| ||||||||||| |||| ||||| ||||||||||||||| || | |
|
|
| T |
32973722 |
aattagacgagatgttgtctttgacgaagaaggaaaatgggaatttagaactcacaaaaaggaatacaatttctttccataatttgaagaagaaacatct |
32973821 |
T |
|
| Q |
483 |
agagaagttgaacaagt |
499 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
32973822 |
agagacgttcaacaagt |
32973838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University