View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9077_low_10 (Length: 604)

Name: NF9077_low_10
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9077_low_10
NF9077_low_10
[»] chr2 (34 HSPs)
chr2 (11-604)||(33068158-33068740)
chr2 (20-336)||(33076510-33076832)
chr2 (20-226)||(33086192-33086398)
chr2 (33-248)||(33046619-33046834)
chr2 (43-248)||(33060067-33060272)
chr2 (414-528)||(565711-565826)
chr2 (422-528)||(6334699-6334805)
chr2 (420-505)||(12762896-12762981)
chr2 (417-505)||(24389645-24389733)
chr2 (414-505)||(12848491-12848582)
chr2 (414-540)||(33634817-33634943)
chr2 (412-505)||(4654978-4655071)
chr2 (414-491)||(30523013-30523090)
chr2 (416-531)||(8964363-8964477)
chr2 (414-501)||(9049169-9049256)
chr2 (414-505)||(33454964-33455055)
chr2 (414-487)||(431652-431726)
chr2 (415-505)||(21277549-21277638)
chr2 (412-505)||(37284903-37284996)
chr2 (414-490)||(6411393-6411469)
chr2 (439-491)||(30822764-30822816)
chr2 (414-505)||(6083921-6084012)
chr2 (414-528)||(12205492-12205607)
chr2 (415-490)||(25626959-25627034)
chr2 (414-460)||(15806059-15806105)
chr2 (388-505)||(30869551-30869670)
chr2 (414-467)||(32066756-32066809)
chr2 (415-531)||(40874785-40874902)
chr2 (430-505)||(3074076-3074152)
chr2 (413-491)||(3666456-3666534)
chr2 (434-528)||(9448429-9448522)
chr2 (414-528)||(11944892-11945006)
chr2 (413-474)||(43678569-43678630)
chr2 (413-528)||(37313687-37313800)
[»] chr3 (18 HSPs)
chr3 (413-528)||(45757902-45758017)
chr3 (414-502)||(14146099-14146187)
chr3 (414-529)||(37388379-37388494)
chr3 (416-537)||(29611984-29612106)
chr3 (414-528)||(48551013-48551127)
chr3 (422-501)||(12140145-12140224)
chr3 (414-505)||(25317801-25317892)
chr3 (422-505)||(28691951-28692034)
chr3 (414-490)||(20821314-20821391)
chr3 (414-505)||(3027003-3027095)
chr3 (413-465)||(33072129-33072181)
chr3 (414-501)||(45584347-45584432)
chr3 (437-525)||(46725633-46725721)
chr3 (414-490)||(54911212-54911288)
chr3 (414-528)||(24313524-24313639)
chr3 (421-485)||(40614291-40614356)
chr3 (446-511)||(50644124-50644189)
chr3 (414-454)||(53040516-53040556)
[»] chr8 (23 HSPs)
chr8 (413-531)||(7627865-7627983)
chr8 (413-505)||(1876500-1876592)
chr8 (414-533)||(12002235-12002354)
chr8 (413-528)||(11533205-11533320)
chr8 (414-529)||(39594508-39594622)
chr8 (414-499)||(44220729-44220814)
chr8 (414-501)||(32271170-32271257)
chr8 (415-494)||(40628987-40629066)
chr8 (413-505)||(14016885-14016977)
chr8 (415-526)||(18842275-18842386)
chr8 (412-502)||(20522943-20523033)
chr8 (413-501)||(30486609-30486697)
chr8 (414-460)||(36907841-36907887)
chr8 (414-490)||(44907229-44907306)
chr8 (415-491)||(37449550-37449626)
chr8 (415-505)||(38019439-38019528)
chr8 (414-490)||(31844236-31844313)
chr8 (414-474)||(26014773-26014833)
chr8 (414-505)||(2376747-2376838)
chr8 (420-485)||(4278957-4279021)
chr8 (469-542)||(5687249-5687322)
chr8 (413-456)||(24869454-24869498)
chr8 (413-460)||(44024052-44024100)
[»] chr1 (29 HSPs)
chr1 (414-503)||(48947202-48947291)
chr1 (413-505)||(16113915-16114007)
chr1 (417-528)||(31042974-31043085)
chr1 (414-490)||(48905-48981)
chr1 (428-528)||(35259079-35259179)
chr1 (414-505)||(33791758-33791849)
chr1 (414-505)||(39973888-39973979)
chr1 (413-505)||(3047863-3047955)
chr1 (414-505)||(40286854-40286945)
chr1 (423-490)||(290602-290669)
chr1 (414-505)||(42573788-42573879)
chr1 (423-505)||(49478808-49478891)
chr1 (416-537)||(31807800-31807922)
chr1 (415-505)||(34861232-34861322)
chr1 (413-491)||(51904587-51904665)
chr1 (415-528)||(40341574-40341688)
chr1 (414-479)||(38172667-38172732)
chr1 (414-490)||(40053304-40053380)
chr1 (414-505)||(4040889-4040980)
chr1 (413-528)||(10355045-10355160)
chr1 (422-501)||(35543430-35543509)
chr1 (415-460)||(24034098-24034143)
chr1 (415-456)||(30548318-30548359)
chr1 (439-491)||(1656446-1656498)
chr1 (417-505)||(46804846-46804934)
chr1 (413-468)||(9931808-9931863)
chr1 (415-505)||(290869-290959)
chr1 (415-460)||(26700290-26700335)
chr1 (416-456)||(30350938-30350978)
[»] scaffold0010 (1 HSPs)
scaffold0010 (414-505)||(26697-26788)
[»] chr6 (7 HSPs)
chr6 (413-528)||(13445749-13445864)
chr6 (413-528)||(5704577-5704690)
chr6 (414-490)||(10364754-10364830)
chr6 (415-479)||(29716784-29716849)
chr6 (412-479)||(34552340-34552407)
chr6 (414-467)||(23344605-23344659)
chr6 (414-491)||(10429738-10429814)
[»] chr4 (26 HSPs)
chr4 (414-505)||(53261554-53261645)
chr4 (413-528)||(23136525-23136640)
chr4 (426-505)||(49951721-49951800)
chr4 (414-503)||(36876076-36876165)
chr4 (416-501)||(45743315-45743400)
chr4 (413-505)||(37461491-37461582)
chr4 (414-505)||(31262912-31263002)
chr4 (414-504)||(35153248-35153339)
chr4 (414-505)||(40252652-40252742)
chr4 (413-528)||(52650708-52650823)
chr4 (414-476)||(44570123-44570185)
chr4 (414-490)||(3179025-3179102)
chr4 (415-491)||(38354501-38354578)
chr4 (414-490)||(50617507-50617583)
chr4 (414-469)||(25042753-25042808)
chr4 (413-490)||(39767218-39767295)
chr4 (422-490)||(41394009-41394078)
chr4 (413-490)||(47937874-47937951)
chr4 (430-505)||(17970806-17970882)
chr4 (413-457)||(20022234-20022278)
chr4 (437-505)||(21241123-21241191)
chr4 (413-505)||(49795141-49795232)
chr4 (415-490)||(22889271-22889346)
chr4 (415-490)||(22940935-22941010)
chr4 (414-489)||(41370187-41370262)
chr4 (437-472)||(49421937-49421972)
[»] chr7 (18 HSPs)
chr7 (414-490)||(8237961-8238037)
chr7 (414-538)||(24299150-24299274)
chr7 (414-501)||(34299762-34299849)
chr7 (414-500)||(19619993-19620079)
chr7 (414-505)||(3267629-3267720)
chr7 (412-490)||(41150032-41150110)
chr7 (413-490)||(44452059-44452137)
chr7 (414-499)||(5482427-5482511)
chr7 (414-505)||(43492220-43492312)
chr7 (414-505)||(39316312-39316403)
chr7 (414-456)||(32699401-32699443)
chr7 (422-490)||(31498656-31498724)
chr7 (413-468)||(24610856-24610911)
chr7 (413-528)||(26871745-26871859)
chr7 (415-505)||(5907820-5907909)
chr7 (437-527)||(38988680-38988770)
chr7 (413-490)||(46716190-46716267)
chr7 (418-501)||(25036987-25037071)
[»] chr5 (15 HSPs)
chr5 (413-503)||(14309105-14309195)
chr5 (413-505)||(4695068-4695160)
chr5 (414-502)||(26432261-26432349)
chr5 (414-500)||(21259437-21259523)
chr5 (414-494)||(26686671-26686751)
chr5 (414-494)||(26956402-26956482)
chr5 (414-490)||(36609150-36609226)
chr5 (414-501)||(38594950-38595037)
chr5 (436-503)||(41568708-41568775)
chr5 (414-474)||(16636682-16636742)
chr5 (422-505)||(10228315-10228397)
chr5 (413-479)||(28639574-28639641)
chr5 (414-491)||(22601785-22601862)
chr5 (412-505)||(39177678-39177770)
chr5 (414-501)||(17774301-17774388)
[»] scaffold0053 (1 HSPs)
scaffold0053 (447-505)||(5758-5816)
[»] scaffold0037 (1 HSPs)
scaffold0037 (414-491)||(35273-35349)
[»] scaffold0236 (1 HSPs)
scaffold0236 (414-490)||(19578-19654)
[»] scaffold0027 (1 HSPs)
scaffold0027 (415-451)||(13355-13391)


Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 604
Target Start/End: Original strand, 33068158 - 33068740
Alignment:
Q  11 agcagcacagaacacagaacctgaaatggagaagaaatggtggaacacaatcttggacattaaggaagccaaacatcaactcatgtttgcactgccaata 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33068158 agcaacacagaacacagaacctgaaatggagaagaaatggtggaacaaaatcttggacattaaggaagccaaacatcaactcatgtttgcactgccaata 33068257  T
Q  111 attcttacaacaatattatattactcaattactttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagccggtgctactcttgctaact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33068258 attcttacaacaatattatattactcaattactttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagccggtgctactcttgctaact 33068357  T
Q  211 cgtggtttggtgtcactgccgtcggggttatggtaatttactatttttaacatctggtctcatatataagcaa-taattcaaagaaagttatcatatatc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| |  |||||||||||||||||| ||||    
T  33068358 cgtggtttggtgtcactgccgtcggggttatggtaatttactatttttaacatccggtctcggatataagcaatttgttcaaagaaagttatcatgtatc 33068457  T
Q  310 ttaggtttcatcaactttcttttgatattaaactttttcttatatttaaaatggaaatgttaattagtgctcc----cgagacttaaagaccataaaaag 405  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| || ||| ||    ||    |||| ||||||||||||    
T  33068458 ttaggtttcatcaactttcttttgatattaaacttttgcttatatttaaaagggaaatattaactattgccccagggcgctggttaaggaccataaaaag 33068557  T
Q  406 taacttcttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||||     | |    
T  33068558 taac----tttttatgaaagtttgtataatcagtgcattagaaattgaaaactttcacatttttaaaaaataattacttaatttagcattct-----att 33068648  T
Q  506 ttttcgaggacactcgttaacaaaactctatttaaaaccataacaatgctcatgtaagagttgataaacatacttgtgttgttttaatttcttcgcttt 604  Q
    |        ||||||||||||||||  |||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  33068649 t-------aacactcgttaacaaaatcctatttaaaaccataataatgcttatgtaagaattgataaacatacttatgttgttttaagttcttcgcttt 33068740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 33076510 - 33076832
Alignment:
Q  20 gaacacagaacctgaaatggagaagaaatggtggaacacaatcttggacattaaggaagccaaacatcaactcatgtttgcactgccaataattcttaca 119  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  33076510 gaacacagaacctgaaatggagaagaaatggtggaacaaaatcttggacattaaggaaaccaaacatcaactcatgttttcactgccaataattcttaca 33076609  T
Q  120 acaatattatattactcaattactttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagccggtgctactcttgctaactcgtggtttg 219  Q
    ||| |||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  33076610 acattattatataactcaatcactttggtttctgtcatgcttattggtcatctgggtgagcttcagttagctggtgctactcttgctaactcgtggtttg 33076709  T
Q  220 gtgtcactgccgtcggggttatggtaatttactatttttaacatctggtctcatatataagcaataattcaaagaaagttatca--tatatcttaggt-- 315  Q
    | ||||||||||| || ||||||||||||||||||||||  |||| | ||||| |||||||||||  |||||||||||||||||  ||||||||||||      
T  33076710 gcgtcactgccgtgggagttatggtaatttactattttttgcatccgatctcaaatataagcaattgttcaaagaaagttatcaagtatatcttaggtca 33076809  T
Q  316 --ttcatcaactttcttttgata 336  Q
      | |||||||||||||||||||    
T  33076810 agtacatcaactttcttttgata 33076832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 33086192 - 33086398
Alignment:
Q  20 gaacacagaacctgaaatggagaagaaatggtggaacacaatcttggacattaaggaagccaaacatcaactcatgtttgcactgccaataattcttaca 119  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||||| || | ||||| ||| |||||    
T  33086192 gaacacagaacctgaaatggagaagaaatggtggaataaaatcttggacattgaggaagcaaaacatcaactcatgttttcattaccaatgatttttaca 33086291  T
Q  120 acaatattatattactcaattactttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagccggtgctactcttgctaactcgtggtttg 219  Q
    |   |||| |||||||  || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||      
T  33086292 aatttattttattacttgatcactttggtttctgtcatgcttgttggtcatcttggtgaccttcagttagcaggtgctactcttgccaactcatggttca 33086391  T
Q  220 gtgtcac 226  Q
    |||||||    
T  33086392 gtgtcac 33086398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 33046619 - 33046834
Alignment:
Q  33 gaaatggagaagaaatggtggaacacaatcttggacattaaggaagccaaacatcaactcatgtttgcactgccaataattcttacaacaatattatatt 132  Q
    ||||||||||| ||||||||||||| ||||||||||||  |||||||||||  ||||||||||||| || | ||||| ||| ||||||   |||| ||||    
T  33046619 gaaatggagaataaatggtggaacaaaatcttggacatagaggaagccaaaattcaactcatgttttcattaccaatgatttttacaaacttattttatt 33046718  T
Q  133 actcaattactttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagccggtgctactcttgctaactcgtggtttggtgtcactgccgt 232  Q
    |||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||| |||    
T  33046719 acttgattacattggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggtttagtgtcactggcgt 33046818  T
Q  233 cggggttatggtaatt 248  Q
     |  ||||||||||||    
T  33046819 agcagttatggtaatt 33046834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 33060067 - 33060272
Alignment:
Q  43 agaaatggtggaacacaatcttggacattaaggaagccaaacatcaactcatgtttgcactgccaataattcttacaacaatattatattactcaattac 142  Q
    ||||||||||||||| ||||||||||||  |||||||||||  ||||||||||||| || | ||||| ||| ||||||   |||| |||||||  || ||    
T  33060067 agaaatggtggaacaaaatcttggacatagaggaagccaaaattcaactcatgttttcattaccaatgatttttacaaacttattttattacttgatcac 33060166  T
Q  143 tttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagccggtgctactcttgctaactcgtggtttggtgtcactgccgtcggggttatg 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||| ||| |  ||||||    
T  33060167 tttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggtttagtgtcactggcgtagcagttatg 33060266  T
Q  243 gtaatt 248  Q
    ||||||    
T  33060267 gtaatt 33060272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 414 - 528
Target Start/End: Original strand, 565711 - 565826
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaata--atgacttaatttaacattcttaaagagtttttcg 511  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||   | |||||||||| ||| |||||||||| | |||    
T  565711 tttttatgaaagtttgtgtaattagtgcataggaaattgaaaactttcacatttttaaagaatacttttacttaatttagcatgcttaaagagtatctcg 565810  T
Q  512 aggacactcgttaacaa 528  Q
     ||||||||||||||||    
T  565811 -ggacactcgttaacaa 565826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 422 - 528
Target Start/End: Original strand, 6334699 - 6334805
Alignment:
Q  422 aaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgaggacactcg 521  Q
    ||||||| | |||||| |||||||||||||||||||||| |||||||| |||||||||   |||||||| |||  ||||||||| || ||||||||||||    
T  6334699 aaagtttatataatcaatgcattggaaattgaaaactttgacatttttaaaaaataattttttaatttagcatgtttaaagagtgttccgaggacactcg 6334798  T
Q  522 ttaacaa 528  Q
    |||||||    
T  6334799 ttaacaa 6334805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 420 - 505
Target Start/End: Original strand, 12762896 - 12762981
Alignment:
Q  420 tgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| | || ||||||||||    
T  12762896 tgaaagtttgtgtaaacagtgcattggaaattgaaaattttaacattttttaagaataattacttaattttaaatgcttaaagagt 12762981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 24389645 - 24389733
Alignment:
Q  417 ttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| ||  || |||||| |||||||||| ||| ||||||||||    
T  24389645 ttatgaaagtttgtgtaatcagcgcattggaaattgaaaactttgacatcttaaaagaataattacttaatttagcatgcttaaagagt 24389733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 12848491 - 12848582
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| ||||| || || |||| | ||||||||||| || ||||||||||    
T  12848491 tttttatgaaagtttgtgtaattagtgcaatggaaattgaaaactttgacattattaaagaatagttacttaatttaatatgcttaaagagt 12848582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 414 - 540
Target Start/End: Original strand, 33634817 - 33634943
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgag 513  Q
    ||||||| |||  ||||| ||||||| |||||||||||||||||||||| |||||  |  |||||| | |||||||||||| |||||||||| | || ||    
T  33634817 tttttataaaaagttgtgcaatcagtacattggaaattgaaaactttcatattttaaacgaataattatttaatttaacatccttaaagagtgtctcaag 33634916  T
Q  514 gacactcgttaacaaaactctatttaa 540  Q
      ||||||||||||| ||||| |||||    
T  33634917 tgcactcgttaacaagactctctttaa 33634943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 4654978 - 4655071
Alignment:
Q  412 cttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||  ||||||||||||||| |||||||| |||||||||||||| | |||||  ||||||||| |  ||||||| ||| ||||||||||    
T  4654978 cttttttacaaaagtttgtgtaatcggtgcattgaaaattgaaaactttgatattttaaaaaaataattatctaatttagcatgcttaaagagt 4655071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 30523090 - 30523013
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||| ||||| || || || ||| | |||||||||    
T  30523090 tttttatgaaagtttgtgtaattagtacattggaaattgaaaactttgacattgttaaagaaaaattatttaatttaa 30523013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 8964477 - 8964363
Alignment:
Q  416 tttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgagga 515  Q
    ||||||||| |||||||||||| |||||||||||||||||  ||| || ||||| || |||||| ||||||||||  || |||||| |||  || || ||    
T  8964477 tttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaacagtgcttgga-ga 8964379  T
Q  516 cactcgttaacaaaac 531  Q
    ||||||||||| ||||    
T  8964378 cactcgttaaccaaac 8964363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 9049169 - 9049256
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    ||||||| ||| |||||||||| | ||||||| |||||||||| ||| |||||||  || |||||| |||||||||||||| ||||||    
T  9049169 tttttataaaaatttgtgtaattaatgcattgaaaattgaaaaatttaacattttaaaagaataattacttaatttaacatgcttaaa 9049256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 33455055 - 33454964
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||  ||||||||||| || |||| |||||||||||||| |||||||| || |||| |  ||||||||| ||| ||||||||||    
T  33455055 tttttatgaaaagttgtgtaatcaatgtattgtaaattgaaaactttgacatttttaaagaatagtttcttaatttagcatgcttaaagagt 33454964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 414 - 487
Target Start/End: Original strand, 431652 - 431726
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaat 487  Q
    |||||||||||||||||||||  | ||||||||||||||||||| ||| |||||||| || |||||| |||||||    
T  431652 tttttatgaaagtttgtgtaaaaaagtgcattggaaattgaaaattttaacatttttaaagaataattacttaat 431726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 21277638 - 21277549
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||| ||||||  |||||||||||||||| || ||||||| ||| |||||||  ||||||||| ||||||||||| || ||||||||||    
T  21277638 ttttataaaagttactgtaatcagtgcattgcaa-ttgaaaagtttgacattttaaaaaaataattacttaatttaaaatacttaaagagt 21277549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 37284903 - 37284996
Alignment:
Q  412 cttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||  ||||||| ||||| | ||||||| |||||||||| ||| | |||||| ||||||||| ||||||||||| ||  |||||||||    
T  37284903 cttttttatagaagtttgcgtaattattgcattgaaaattgaaaaatttaagatttttaaaaaataattacttaatttaaaatatttaaagagt 37284996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 6411393 - 6411469
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||||| | |||||  || |||||| |||| |||||    
T  6411393 tttttataaaagtatgtgtaatcagtacattggaaattgaaaacttttaaattttaaaagaataattactttattta 6411469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 30822764 - 30822816
Alignment:
Q  439 tgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    |||||||||||||||||||||| |||||||  ||||||||| |||||||||||    
T  30822764 tgcattggaaattgaaaactttgacattttcaaaaaataattacttaatttaa 30822816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 6083921 - 6084012
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||| |||||||||||||||||  ||||| |||||||||||||| | |||||  || |||||| ||| ||||||  || ||||||||||    
T  6083921 tttttataaaagtttgtgtaatcagcacattgaaaattgaaaactttgatattttaaaataataattactaaatttagtatgcttaaagagt 6084012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 528
Target Start/End: Complemental strand, 12205607 - 12205492
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    ||||| ||||| |||||||||| | |||||||| |||| ||||||||| | |||| | ||||||||| ||||||||||| ||  ||||||| | | | ||    
T  12205607 tttttttgaaaatttgtgtaataatgtgcattgcaaatggaaaactttgatatttataaaaaataattacttaatttaaaatatttaaagaatgtataga 12205508  T
Q  513 ggacactcgttaacaa 528  Q
    | ||||||||||||||    
T  12205507 gtacactcgttaacaa 12205492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 490
Target Start/End: Complemental strand, 25627034 - 25626959
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||| ||||||||| || ||||||||| ||||||||| | |||||| || |||||| | ||||||||    
T  25627034 ttttatgaaagttggtgtaatcaatgtattggaaatcgaaaactttaaaatttttaaagaataattatttaattta 25626959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 15806059 - 15806105
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaacttt 460  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  15806059 tttttataaaagtttgtgtaatcaatgcattgaaaattgaaaacttt 15806105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 388 - 505
Target Start/End: Original strand, 30869551 - 30869670
Alignment:
Q  388 cttaaagaccataaaaagtaacttctttttt----atgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgact 483  Q
    ||||| |||| |||| |||||||| ||||||    || ||| ||||||| ||||||| ||| ||||||||||||||| |||||||| || |||||  | |    
T  30869551 cttaaggaccttaaatagtaacttttttttttatcatcaaaatttgtgttatcagtgtattagaaattgaaaactttaacatttttaaagaataa--att 30869648  T
Q  484 taatttaacattcttaaagagt 505  Q
    ||||||| ||| ||||||||||    
T  30869649 taatttagcatgcttaaagagt 30869670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 32066809 - 32066756
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattt 467  Q
    |||||||||||||||||||||| ||| |||| |||||| |||||||| ||||||    
T  32066809 tttttatgaaagtttgtgtaattagtacattagaaattaaaaactttgacattt 32066756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 531
Target Start/End: Complemental strand, 40874902 - 40874785
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaac-tttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgag 513  Q
    ||||||||||||| |||  || ||||| ||| ||||||||||  ||| |||||||| ||||||||| ||||||||||| |   ||||||||| |  || |    
T  40874902 ttttatgaaagttagtgccattagtgcgttgaaaattgaaaaagtttaacatttttaaaaaataattacttaatttaaaaagtttaaagagtgtcccgtg 40874803  T
Q  514 gacactcgttaacaaaac 531  Q
    || |||||||||||||||    
T  40874802 gatactcgttaacaaaac 40874785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 505
Target Start/End: Complemental strand, 3074152 - 3074076
Alignment:
Q  430 tgtaatcagtgcattggaaattg-aaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||||||||||||||| |||||||| | |||||  |  |||||| |||||||||| ||| ||||||||||    
T  3074152 tgtaatcagtgcattggaaattgaaaaactttgatattttaaatgaataattacttaatttatcatgcttaaagagt 3074076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 491
Target Start/End: Original strand, 3666456 - 3666534
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    |||||||||||||||| |||||||| || ||||  |||| |||| ||| | |||||| || |||||| |||||||||||    
T  3666456 ttttttatgaaagtttatgtaatcaatgtattgagaattaaaaattttaatatttttaaagaataattacttaatttaa 3666534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 528
Target Start/End: Complemental strand, 9448522 - 9448429
Alignment:
Q  434 atcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgaggacactcgttaacaa 528  Q
    |||||||||||| |||||||||| ||| ||| |||| ||||||||  ||||||||||  || ||| |||| | ||| | ||||||||||||||||    
T  9448522 atcagtgcattgaaaattgaaaagtttgacagttttaaaaaataactacttaatttagaatactttaagaatgttt-ggggacactcgttaacaa 9448429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 528
Target Start/End: Original strand, 11944892 - 11945006
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgag 513  Q
    |||||||||||  ||||||| ||| ||||||| |||||| ||   || |||||||||||||||||| ||| || |||  || |||||||||| | ||  |    
T  11944892 tttttatgaaaagttgtgtattcaatgcattgaaaattgtaatagttgacattttttaaaaataattactaaaattaggatccttaaagagtgtctctgg 11944991  T
Q  514 gacactcgttaacaa 528  Q
     ||||||||||||||    
T  11944992 aacactcgttaacaa 11945006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 474
Target Start/End: Original strand, 43678569 - 43678630
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaa 474  Q
    |||||| | |||||||||||||| | | ||||| |||||||||||||| | |||||||||||    
T  43678569 ttttttttaaaagtttgtgtaattaatacattgaaaattgaaaactttaatattttttaaaa 43678630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 37313687 - 37313800
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    |||||| | |||||||||||||| ||||||||  ||||| |||| ||| |  ||||| || || ||| ||||||||||| || |||||| ||  | ||||    
T  37313687 tttttttttaaagtttgtgtaattagtgcattacaaattaaaaattttgatttttttaaagaaaaattacttaatttaaaatgcttaaaaag--tctcga 37313784  T
Q  513 ggacactcgttaacaa 528  Q
     |||||||||||||||    
T  37313785 agacactcgttaacaa 37313800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 413 - 528
Target Start/End: Complemental strand, 45758017 - 45757902
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||  ||||||||||||| ||||||||||  | ||     
T  45758017 ttttttatgaaagtttgtgtaatcagtgcattgtaaattgaaaactttgacatttttaaagaataattgcttaatttaacatgcttaaagagtgatccgg 45757918  T
Q  513 ggacactcgttaacaa 528  Q
     |||||||||||||||    
T  45757917 agacactcgttaacaa 45757902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 502
Target Start/End: Complemental strand, 14146187 - 14146099
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaag 502  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||| ||||||   ||||||||| |||||||||| |||||| ||||    
T  14146187 tttttatagaagtttgtgtaatcagtgcattagaaattgaaaactttgacatttaaaaaaaataattacttaatttagcattctcaaag 14146099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 529
Target Start/End: Complemental strand, 37388494 - 37388379
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttc-ga 512  Q
    ||||||| ||| |||||||||||| ||||||| ||| |||||| |||||||||||| || |||||| ||||||||||||||  ||||||||| || | ||    
T  37388494 tttttataaaaatttgtgtaatcaatgcattgaaaactgaaaaatttcacatttttaaagaataattacttaatttaacatatttaaagagtattccaga 37388395  T
Q  513 ggacactcgttaacaaa 529  Q
    || ||||||||||||||    
T  37388394 gg-cactcgttaacaaa 37388379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 537
Target Start/End: Complemental strand, 29612106 - 29611984
Alignment:
Q  416 tttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgagg 514  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |||||||||| || |||||| ||||| ||||  ||  ||||||||| |  || ||    
T  29612106 tttatgaaagtttgtgtaataaagtgcattggaaattgaaaactgtcacatttttaaagaataattacttattttagaatgtttaaagagtgtcccgggg 29612007  T
Q  515 acactcgttaacaaaactctatt 537  Q
     ||||||||||||| || |||||    
T  29612006 gcactcgttaacaagaccctatt 29611984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 414 - 528
Target Start/End: Complemental strand, 48551127 - 48551013
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgag 513  Q
    ||||||| |||  |||||||||| |||||||| |||||||||||||| |||||||| || ||||||  ||||||||| ||| ||||||||||  |  | |    
T  48551127 tttttataaaaaattgtgtaatcggtgcattgaaaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaaagagtgctctggg 48551028  T
Q  514 gacactcgttaacaa 528  Q
    |||||||||||||||    
T  48551027 gacactcgttaacaa 48551013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 501
Target Start/End: Complemental strand, 12140224 - 12140145
Alignment:
Q  422 aaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||||  || |||||| | |||||||| ||| ||||||    
T  12140224 aaagtttgtataatcagtacattggaaattgaaaactttgacattttaaaagaataattatttaatttagcatgcttaaa 12140145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 25317892 - 25317801
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||| | |||||  || |||||| |||| ||||| ||| ||| ||||||    
T  25317892 tttttataaaagtttgtgtaatcgatgcattggaaattgaaaacttttaaattttaaaagaataattactttatttagcatgcttgaagagt 25317801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 505
Target Start/End: Original strand, 28691951 - 28692034
Alignment:
Q  422 aaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||| | || ||| ||||||||||||||| |||||||  || |||||| ||||||||||| ||  |||||||||    
T  28691951 aaagtttgtgtaattattgtattagaaattgaaaactttaacattttaaaagaataattacttaatttaatatgtttaaagagt 28692034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 20821391 - 20821314
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||||||||||||||||| | |||||||||||||| ||| |||| | |||||| || |||||| ||||| ||||    
T  20821391 tttttatgaaagtttgtgtaataaagtgcattggaaattaaaacctttaatatttttaaagaataattacttagttta 20821314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 3027003 - 3027095
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||||||||| | | |||||||||||| ||||| |||| | |||||| || || ||| ||||||||||  || ||||||||||    
T  3027003 tttttatgaaagtttgtgtagtgaagtgcattggaaaatgaaacctttgatatttttaaataaaaattacttaatttagaatgcttaaagagt 3027095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 33072129 - 33072181
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacat 465  Q
    |||||||| ||| |||||||||| | |||||||||||||||||||||| ||||    
T  33072129 ttttttataaaaatttgtgtaattaatgcattggaaattgaaaactttgacat 33072181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 45584347 - 45584432
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    |||||||||||||||||||||||| |  |||| ||||| |||||||  | |||||  || |||||| |||||||||||||| ||||||    
T  45584347 tttttatgaaagtttgtgtaatcaatatattgaaaattaaaaactt--atattttaaaagaataattacttaatttaacatgcttaaa 45584432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 525
Target Start/End: Complemental strand, 46725721 - 46725633
Alignment:
Q  437 agtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgaggacactcgttaa 525  Q
    ||||||||| |||||||||| ||| ||||||||  |||||||  ||||||||||  || |||||||||| |  || |||||||||||||    
T  46725721 agtgcattgaaaattgaaaattttaacatttttataaaataactacttaatttagaatgcttaaagagtatcccgtggacactcgttaa 46725633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 54911288 - 54911212
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||||| |||||||| || |||| ||||| |||||||| |||||||  || |||||| | ||||||||    
T  54911288 tttttatgaaagtttatgtaatcaatgtattgaaaatttaaaactttaacattttaaaagaataattatttaattta 54911212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 528
Target Start/End: Complemental strand, 24313639 - 24313524
Alignment:
Q  414 tttttatgaaagtttgtgtaatcag-tgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    ||||||||||| |||||||| | |  ||||||| |||||||||||||| |||||||| || ||||||   ||||||||  ||  |||||||||    |||    
T  24313639 tttttatgaaaatttgtgtagtaaaatgcattgaaaattgaaaactttgacatttttaaagaataattgtttaatttagaatgtttaaagagtgccccga 24313540  T
Q  513 ggacactcgttaacaa 528  Q
    ||||||||||||||||    
T  24313539 ggacactcgttaacaa 24313524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 485
Target Start/End: Original strand, 40614291 - 40614356
Alignment:
Q  421 gaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgactta 485  Q
    ||||||||||||||| | |||||||| ||||||||||| || |||||||| || |||||| |||||    
T  40614291 gaaagtttgtgtaataaagtgcattgaaaattgaaaacattgacatttttaaagaataattactta 40614356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 50644189 - 50644124
Alignment:
Q  446 gaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcg 511  Q
    |||||| |||| ||| |||||||| ||||||||  ||||||||||| || |||||||||| |||||    
T  50644189 gaaattaaaaaatttgacatttttaaaaaataactacttaatttaatatacttaaagagtgtttcg 50644124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 53040556 - 53040516
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaa 454  Q
    |||||||||||||||||||| ||| | ||||||||||||||    
T  53040556 tttttatgaaagtttgtgtattcaatacattggaaattgaa 53040516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 413 - 531
Target Start/End: Original strand, 7627865 - 7627983
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    |||||||||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||| | |||     
T  7627865 ttttttatgaaagtttgtgtgatcagtgtattagaaattaaaaactttcacattttttaaaaataattacttaatttaacatgtttaaagagtgtctcgg 7627964  T
Q  513 ggacactcgttaacaaaac 531  Q
      | |||||||||||||||    
T  7627965 aaatactcgttaacaaaac 7627983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 413 - 505
Target Start/End: Original strand, 1876500 - 1876592
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||  || |||||| |||||||||| ||| ||||||||||    
T  1876500 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaattttgacattttaaaagaataattacttaatttagcatgcttaaagagt 1876592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 414 - 533
Target Start/End: Complemental strand, 12002354 - 12002235
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgag 513  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||  || ||||||||||    ||||    
T  12002354 tttttataaaaatttgtgtaatcagtgcattggaaattgaaaacttttacatttttaaagaataattacttaatttagtatacttaaagagtgccccgag 12002255  T
Q  514 gacactcgttaacaaaactc 533  Q
    || |||||||||||| ||||    
T  12002254 gatactcgttaacaagactc 12002235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 413 - 528
Target Start/End: Complemental strand, 11533320 - 11533205
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    |||||||||||||||||||   |||||||||||||||||||||||||| |||||||| || ||||||   ||||||||||||  ||||||||| |  |||    
T  11533320 ttttttatgaaagtttgtgccttcagtgcattggaaattgaaaactttgacatttttaaagaataatttattaatttaacatgtttaaagagtgtcccga 11533221  T
Q  513 ggacactcgttaacaa 528  Q
      ||||||||||||||    
T  11533220 aaacactcgttaacaa 11533205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 529
Target Start/End: Original strand, 39594508 - 39594622
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgag 513  Q
    ||||||||||||||||| ||||||||| | || |||||||||||||| | |||| | || ||||||  ||||||||| |||||||||||||| || ||||    
T  39594508 tttttatgaaagtttgtataatcagtgtaatgaaaattgaaaactttgatatttataaagaataatttcttaatttagcattcttaaagagtgttccgag 39594607  T
Q  514 gacactcgttaacaaa 529  Q
    | ||||||||||||||    
T  39594608 g-cactcgttaacaaa 39594622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 499
Target Start/End: Original strand, 44220729 - 44220814
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattctta 499  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||| |||||||  || |||||| |||||||||||||| ||||    
T  44220729 tttttatggacgtttgtgtaatgagtgcattggaaattgaaaactttgacattttaaaagaataattacttaatttaacatgctta 44220814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 414 - 501
Target Start/End: Complemental strand, 32271257 - 32271170
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    |||||||| ||||||||||||||| || ||| ||||||||||||||| |||||||| |||||||||  |||||||||| || ||||||    
T  32271257 tttttatggaagtttgtgtaatcaatgaattagaaattgaaaactttaacatttttaaaaaataatttcttaatttaaaatgcttaaa 32271170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 415 - 494
Target Start/End: Original strand, 40628987 - 40629066
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacat 494  Q
    |||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |  |||||| ||||||||||||||    
T  40628987 ttttataaaagtttgtgtaatcagtgaattggaaattaaaaactttaacatttttaatgaataattacttaatttaacat 40629066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 505
Target Start/End: Original strand, 14016885 - 14016977
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||  || ||| || |||| ||||| ||| ||||||||||    
T  14016885 ttttttataaaagtttgtgtgatcagtgcattggaaattgaaaacttttaaattttgaaagaatcattactttatttagcatgcttaaagagt 14016977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 415 - 526
Target Start/End: Original strand, 18842275 - 18842386
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgagg 514  Q
    |||||| |||||||||||||||| | ||||  ||||| |||||||| |||||||| || |||||| ||||||||||| ||  ||||||||| |  |||||    
T  18842275 ttttataaaagtttgtgtaatcaatacattaaaaattaaaaactttgacatttttaaagaataattacttaatttaaaatggttaaagagtatcccgagg 18842374  T
Q  515 acactcgttaac 526  Q
     |||||||||||    
T  18842375 gcactcgttaac 18842386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 412 - 502
Target Start/End: Complemental strand, 20523033 - 20522943
Alignment:
Q  412 cttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaag 502  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||| | |||||  || |||||| |||||| ||| ||| |||||||    
T  20523033 cttttttatgaaagtttatgtaattagtgcattgaaaattgaaaacttttaaattttgaaagaataattacttaacttagcatgcttaaag 20522943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 413 - 501
Target Start/End: Complemental strand, 30486697 - 30486609
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    |||||||| |||||||||||||||||||||||  ||||| |||||||| | |||||  || |||||| |||| ||||||||| ||||||    
T  30486697 ttttttataaaagtttgtgtaatcagtgcattataaattaaaaacttttaaattttaaaagaataattactttatttaacatacttaaa 30486609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 36907887 - 36907841
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaacttt 460  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  36907887 tttttataaaagtttgtgtaatcattgcattggaaattgaaaacttt 36907841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 44907306 - 44907229
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattg-aaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||||||||| |||| || ||||||||| |||||| |||| ||| |||||||| ||||||||| ||||||||||    
T  44907306 tttttatgaaagttagtgttattagtgcattgaaaattgaaaaagtttgacatttttaaaaaataattacttaattta 44907229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 491
Target Start/End: Complemental strand, 37449626 - 37449550
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    ||||||||||||| | ||||| |||| |||| |||||||||| ||| |||||||  ||||||||| |||||||||||    
T  37449626 ttttatgaaagttagcgtaattagtgtattgaaaattgaaaagtttgacattttaaaaaaataattacttaatttaa 37449550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 38019439 - 38019528
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||| ||||||||| ||||||| || |||||||||||| | | |||| || ||||||  ||||||||| ||| ||||||||||    
T  38019439 ttttatgaaagtatgtgtaatc-gtgcattagagattgaaaactttaaaaattttaaagaataatttcttaatttagcatgcttaaagagt 38019528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 31844236 - 31844313
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||||||| |||| | |||||||||||||| |||||||| || ||||| |  |||||| ||||||||||    
T  31844236 tttttatgaaagtttgtataatgaagtgcattggaaattcaaaactttgacttttttaaggaataattacttaattta 31844313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 26014773 - 26014833
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaa 474  Q
    ||||||| || |||||||||||||||||||||||| |||||||  || |||||||| ||||    
T  26014773 tttttataaatgtttgtgtaatcagtgcattggaacttgaaaatattaacatttttcaaaa 26014833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 2376747 - 2376838
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||||||| | |||| | | | || ||||||||||||||| | |||||| || |||||| | ||||||||| || ||||||||||    
T  2376747 tttttatgaaagtttatataattaatacgttagaaattgaaaactttgatatttttaaagaataattatttaatttaaaatgcttaaagagt 2376838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 485
Target Start/End: Complemental strand, 4279021 - 4278957
Alignment:
Q  420 tgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgactta 485  Q
    ||||||||||||||||  ||| |||||||||||||||||||  |||||||  |||||||| |||||    
T  4279021 tgaaagtttgtgtaatg-gtgtattggaaattgaaaactttatcatttttataaaataattactta 4278957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 542
Target Start/End: Complemental strand, 5687322 - 5687249
Alignment:
Q  469 ttaaaaataatgacttaatttaacattcttaaagagtttttcgaggacactcgttaacaaaactctatttaaaa 542  Q
    ||||||||||| ||||||||||  || |||||||||| |  || |||||||||||||||| || || |||||||    
T  5687322 ttaaaaataattacttaatttacaatgcttaaagagtgtaccggggacactcgttaacaagaccctttttaaaa 5687249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 456
Target Start/End: Complemental strand, 24869498 - 24869454
Alignment:
Q  413 ttttttatgaaa-gtttgtgtaatcagtgcattggaaattgaaaa 456  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||    
T  24869498 ttttttatgaaaagtttatgtaattagtgcattggaaattgaaaa 24869454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 44024100 - 44024052
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaa-ttgaaaacttt 460  Q
    ||||||||  ||||||||||||||||||||||| ||| |||||||||||    
T  44024100 ttttttatagaagtttgtgtaatcagtgcattgaaaatttgaaaacttt 44024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 414 - 503
Target Start/End: Complemental strand, 48947291 - 48947202
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaaga 503  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||  || ||||||||    
T  48947291 tttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataattacttaatttagtatgcttaaaga 48947202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 16114007 - 16113915
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||| ||||||| ||  || ||||||||||    
T  16114007 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttgacattttgaaaaaataattacttaatatagtatgcttaaagagt 16113915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 417 - 528
Target Start/End: Complemental strand, 31043085 - 31042974
Alignment:
Q  417 ttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgaggac 516  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||| ||||||||||  || |||||||| | |  || ||||    
T  31043085 ttatgaaagtttgtgtaatcaatgcattgaaaattgaaaactttgacatttttaaaaaataattacttaatttagaatgcttaaagactgtgccggggac 31042986  T
Q  517 actcgttaacaa 528  Q
    | ||||||||||    
T  31042985 attcgttaacaa 31042974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 48905 - 48981
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||| ||||||||||    
T  48905 tttttatgaaagtttgtgtaatcggtgcattgaaaattgaaaacttttacatttttcaagaataattacttaattta 48981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 35259079 - 35259179
Alignment:
Q  428 tgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgaggacactcgttaaca 527  Q
    ||||||||||| ||||||||||||||||||||| |||||||| |||||||||  ||||||||| ||| ||||||||||    ||||| ||||||||||||    
T  35259079 tgtgtaatcagcgcattggaaattgaaaacttttacatttttaaaaaataatttcttaatttagcatacttaaagagtgccccgagggcactcgttaaca 35259178  T
Q  528 a 528  Q
    |    
T  35259179 a 35259179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 33791758 - 33791849
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||  || |||||| |||||||||| ||| ||||||||||    
T  33791758 tttttatgaaagtttgtgtaatcggtgtattggaaattgaaaaatttgacattttaaaagaataattacttaatttagcatacttaaagagt 33791849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 39973979 - 39973888
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||  || |||||| |||||||||| ||| ||||||||||    
T  39973979 tttttatgaaagtttgtataatcaatgcattgaaaattgaaaactttaacattttaaaagaataattacttaatttagcatgcttaaagagt 39973888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 3047955 - 3047863
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||||||| |||||| |||||||||||| ||||| ||| |||||||| || || ||| |||||||||| ||| ||||||||||    
T  3047955 ttttttatgaaagtttgtttaatcaatgcattggaaatcgaaaaatttgacatttttaaagaacaattacttaatttagcatgcttaaagagt 3047863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 40286945 - 40286854
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||   |||||  || ||||||||||| ||||| ||| ||||||||||    
T  40286945 tttttataaaagtttgtgtactcagtgcattggaaattgaaaactttttaattttgaaagaataatgactttatttagcatgcttaaagagt 40286854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 290669 - 290602
Alignment:
Q  423 aagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||  || |||||| ||||||||||    
T  290669 aagtttgtgtaatcagtgcattgtaaattgaaaactttgacattttaaaagaataattacttaattta 290602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 42573788 - 42573879
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||  |||||||| |||||||||||||| ||||||||||| || |||||||  || |||||| |||||||||| ||| ||||||||||    
T  42573788 tttttattgaagtttgtataatcagtgcattgaaaattgaaaaccttaacattttaaaagaataattacttaatttagcatgcttaaagagt 42573879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 49478891 - 49478808
Alignment:
Q  423 aagtttgtgtaatcagtgcattggaaattgaaaac-tttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||   ||||||||| |||||| | ||||| ||||||||||    
T  49478891 aagtttgtgtaatcagtgcattggaaattgaaaacttttgacatttaaaaaaaataattacttaactcaacatgcttaaagagt 49478808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 416 - 537
Target Start/End: Original strand, 31807800 - 31807922
Alignment:
Q  416 tttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgagg 514  Q
    |||||||||||||||||||| | |||||||| |||||||||||| |||||||||| || |||||| ||||| ||||  || |||||| |||  | || ||    
T  31807800 tttatgaaagtttgtgtaataaagtgcattgaaaattgaaaactatcacatttttaaagaataattacttattttagaatgcttaaatagtgctccgggg 31807899  T
Q  515 acactcgttaacaaaactctatt 537  Q
     ||||||||||||| || |||||    
T  31807900 gcactcgttaacaagaccctatt 31807922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 34861232 - 34861322
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||| || ||| |||||||| ||||||||||||||  ||| |||||||| ||||||||| ||||||||||  || ||||||||||    
T  34861232 ttttatgaaatttagtgaaatcagtgtattggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagt 34861322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 491
Target Start/End: Original strand, 51904587 - 51904665
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    ||||||||||||||||||||| |  | ||||||||||||||||||||| |||||||  || |||||| |||||||||||    
T  51904587 ttttttatgaaagtttgtgtagttggggcattggaaattgaaaactttaacattttaaaagaataattacttaatttaa 51904665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 415 - 528
Target Start/End: Complemental strand, 40341688 - 40341574
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcaca-ttttttaaaaataatgacttaatttaacattcttaaagagtttttcgag 513  Q
    ||||||||||||| |||||||  |||||||| |||||||||| ||| | | |||||| |||| ||| ||||||||||  || |||||||||| | |||||    
T  40341688 ttttatgaaagttagtgtaattggtgcattgaaaattgaaaagtttgatattttttttaaaaaaattacttaatttagaatacttaaagagtgtctcgag 40341589  T
Q  514 gacactcgttaacaa 528  Q
    | || ||||||||||    
T  40341588 ggcaatcgttaacaa 40341574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 38172732 - 38172667
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataat 479  Q
    ||||||| |||||||||||||||||||||||  ||||| |||||||| |||||||| || ||||||    
T  38172732 tttttataaaagtttgtgtaatcagtgcattaaaaattaaaaacttttacatttttaaagaataat 38172667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 40053380 - 40053304
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||||||||||||||||| | || |||| |||||||||||||| |||||||| || || ||| || |||||||    
T  40053380 tttttatgaaagtttgtgtaataaatgtattgaaaattgaaaactttgacatttttaaagaacaattacctaattta 40053304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 4040980 - 4040889
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||| |||||||||||||||| |||  |||| |||||||||||||| ||| ||||    |||||| ||||||||||| || ||||||||||    
T  4040980 tttttgtgaaagtttgtgtaataagtatattgaaaattgaaaactttgacacttttatgtaataattacttaatttaaaatgcttaaagagt 4040889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 10355045 - 10355160
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    ||||||||| ||||||||| |||| ||  ||||||||||||||| ||  | |||||| ||||||||| |||| |||||  || |||||||||| |||||     
T  10355045 ttttttatggaagtttgtgaaatcggtatattggaaattgaaaatttagatatttttaaaaaataattactttatttagaatacttaaagagtgtttcgg 10355144  T
Q  513 ggacactcgttaacaa 528  Q
    |  || ||||||||||    
T  10355145 gagcattcgttaacaa 10355160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 501
Target Start/End: Original strand, 35543430 - 35543509
Alignment:
Q  422 aaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    |||||||||||||| | |  ||||||||||||||||||| | |||||  ||||||||| |||||||||| ||| ||||||    
T  35543430 aaagtttgtgtaattaatatattggaaattgaaaactttgatattttaaaaaaataattacttaatttagcatgcttaaa 35543509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 460
Target Start/End: Complemental strand, 24034143 - 24034098
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaacttt 460  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||    
T  24034143 ttttataagagtttgtgtaatcagtgcattagaaattgaaaacttt 24034098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 30548359 - 30548318
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaa 456  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  30548359 ttttatgaaagttagtgtaatcagtgtattggaaattgaaaa 30548318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 1656498 - 1656446
Alignment:
Q  439 tgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    |||||||||||||||||| ||| |||||||| ||||||||| | |||||||||    
T  1656498 tgcattggaaattgaaaattttgacatttttaaaaaataattatttaatttaa 1656446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 46804846 - 46804934
Alignment:
Q  417 ttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||  ||||||||||||||||||||||  ||| |||  ||||||| |||||| || | ||||||||  || ||||||||||    
T  46804846 ttatgaaagttaatgtaatcagtgcattggaaattagaaagtttatcatttttaaaaaattattaattaatttagaatgcttaaagagt 46804934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 468
Target Start/End: Complemental strand, 9931863 - 9931808
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacatttt 468  Q
    |||||||| |||||||||||||| | || |||| |||||||||||||| |||||||    
T  9931863 ttttttataaaagtttgtgtaattaatgtattgaaaattgaaaactttgacatttt 9931808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 290869 - 290959
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||| ||||| |||||| |||| |||||||||||| |||||||| | |||||  || |||||| |||  ||||| ||| ||||||||||    
T  290869 ttttataaaagtatgtgtagtcagcgcattggaaattaaaaacttttaaattttgaaagaataattactctatttagcatgcttaaagagt 290959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 460
Target Start/End: Complemental strand, 26700335 - 26700290
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaacttt 460  Q
    |||||| |||||||||||||| |||| |||||||||| ||||||||    
T  26700335 ttttataaaagtttgtgtaatgagtgtattggaaattaaaaacttt 26700290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 30350938 - 30350978
Alignment:
Q  416 tttatgaaagtttgtgtaatcagtgcattggaaattgaaaa 456  Q
    |||||||||||| ||||||||| ||||||| ||||||||||    
T  30350938 tttatgaaagttagtgtaatcaatgcattgaaaattgaaaa 30350978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 26788 - 26697
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||  || |||||| |||||||||| ||| ||||||||||    
T  26788 tttttacgaaagtttgtgtaatcagtgcattgaaaattgaaaactttgacattttaaaataataattacttaatttagcatgcttaaagagt 26697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 13445749 - 13445864
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    |||||||||||||||||||| || ||||| || |||||||||||||||||||||||| || |||| | |||||||||| ||| ||||||||||    ||     
T  13445749 ttttttatgaaagtttgtgtgattagtgcttttgaaattgaaaactttcacatttttaaagaatacttacttaatttagcatgcttaaagagtgcaccgg 13445848  T
Q  513 ggacactcgttaacaa 528  Q
    ||||||||||||||||    
T  13445849 ggacactcgttaacaa 13445864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 5704577 - 5704690
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    |||||||||||||||| |||||||| | ||||| |||||||||||  | |||||||  ||||||||| |||||||||| |||  |||||||||  |||||    
T  5704577 ttttttatgaaagtttatgtaatcaatacattgaaaattgaaaac--taacattttaaaaaaataattacttaatttagcatgtttaaagagtgcttcga 5704674  T
Q  513 ggacactcgttaacaa 528  Q
     ||||||| |||||||    
T  5704675 agacactcattaacaa 5704690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 10364830 - 10364754
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||||||||| || |||||||||||||| |||||||||||||| | |||||| || |||||| ||||||||||    
T  10364830 tttttatgaaagttcgtataatcagtgcattgtaaattgaaaactttgatatttttaaagaataattacttaattta 10364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 29716784 - 29716849
Alignment:
Q  415 ttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataat 479  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||  |||||||||    
T  29716784 ttttatgaaagtttgtgtaataaagtgcattggaaattgaaaactttgacattttaaaaaaataat 29716849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 34552340 - 34552407
Alignment:
Q  412 cttttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataat 479  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||||||| | |||||| || ||||||    
T  34552340 cttttttatgaaagtt-gtgtaataaagtgcattggaaattgaaaactttaatatttttaaagaataat 34552407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 23344659 - 23344605
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattt 467  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||| ||||||    
T  23344659 tttttataaaagtttgtgtaataaagtgcattggaaattgaacactttgacattt 23344605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 10429814 - 10429738
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    ||||||||||||||| |||||||| |||| || |||||||||| ||  ||| |||| ||||||||| |||| ||||||    
T  10429814 tttttatgaaagtttatgtaatcattgcactgaaaattgaaaagttaaaca-ttttaaaaaataattacttgatttaa 10429738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 53261645 - 53261554
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| | |||||| || |||||| |||||||||| ||| ||||||||||    
T  53261645 tttttataaaagtttgtgtaatcactgcattggaaattgaaaacttttaaatttttaaagaataattacttaatttagcatgcttaaagagt 53261554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 23136525 - 23136640
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    |||||| | |||| |||||||||||||||||||||||||||||||||| | |||||  || |||||| ||||||||||| || ||||| ||||  ||||     
T  23136525 ttttttgtaaaagattgtgtaatcagtgcattggaaattgaaaacttttaaattttaaaagaataattacttaatttaatatacttaaggagtgcttcgg 23136624  T
Q  513 ggacactcgttaacaa 528  Q
     |||||||||||||||    
T  23136625 agacactcgttaacaa 23136640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 426 - 505
Target Start/End: Original strand, 49951721 - 49951800
Alignment:
Q  426 tttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||| |||||||| |||||||||||||| |||||||  || |||||| |||||||||| ||| ||||||||||    
T  49951721 tttgtgtaatcggtgcattgaaaattgaaaactttgacattttaaaagaataattacttaatttagcatgcttaaagagt 49951800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 503
Target Start/End: Original strand, 36876076 - 36876165
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaaga 503  Q
    ||||||| |||||||||||||||| || |||||||||||||||| || |||||||  || |||| | |||||||||| ||| ||||||||    
T  36876076 tttttataaaagtttgtgtaatcaatgtattggaaattgaaaacatttacattttaaaagaatagttacttaatttagcatgcttaaaga 36876165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 501
Target Start/End: Complemental strand, 45743400 - 45743315
Alignment:
Q  416 tttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    |||||||||  ||||||||||| || |||| |||||||||||||| |||||||| || ||||||  ||||||||||||| ||||||    
T  45743400 tttatgaaaagttgtgtaatcactgtattgaaaattgaaaactttgacatttttaaagaataatttcttaatttaacatacttaaa 45743315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 413 - 505
Target Start/End: Original strand, 37461491 - 37461582
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||| ||| |||| |||  |||| |||||||||| |||  |||||||||    
T  37461491 ttttttatgaaagtttgtgtaatcggtgcattaaaaattgaaaactttgaca-ttttaaaatttaattacttaatttagcatgtttaaagagt 37461582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 31263002 - 31262912
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||| |||||||||||| ||||| ||||  |||| ||||||||| ||| |||||||||||||| ||||||||||  || ||||||||||    
T  31263002 tttttataaaagtttgtgtagtcagtacattcaaaatcgaaaactttgaca-tttttaaaaataattacttaatttagaatgcttaaagagt 31262912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 504
Target Start/End: Complemental strand, 35153339 - 35153248
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagag 504  Q
    ||||||| |||||||||| ||| | |||||||| |||||||||||||| |||||||| || |||||||| ||||||||| ||  ||||||||    
T  35153339 tttttataaaagtttgtgcaataaagtgcattgaaaattgaaaactttaacatttttaaagaataatgatttaatttaaaatatttaaagag 35153248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 40252742 - 40252652
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||| ||||||||| || |||| |||||||||||||| |||||||| || || ||| ||||||||||| ||  |||||||||    
T  40252742 tttttatgaaagtt-gtgtaatcaatgtattgaaaattgaaaactttaacatttttaaataacaattacttaatttaatatgtttaaagagt 40252652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 52650708 - 52650823
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    ||||||||||||  |||||||||||||| |||| |||||||||| ||| |||||| | || ||||||  ||||||||| |||  ||||||||| || ||     
T  52650708 ttttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgtttaaagagtgttccgg 52650807  T
Q  513 ggacactcgttaacaa 528  Q
     | |||||||||||||    
T  52650808 aggcactcgttaacaa 52650823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 414 - 476
Target Start/End: Original strand, 44570123 - 44570185
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaat 476  Q
    |||||||||||||||||||||||| ||||||| ||||| |||| ||| |||||||| ||||||    
T  44570123 tttttatgaaagtttgtgtaatcaatgcattgaaaattaaaaaatttaacatttttaaaaaat 44570185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 3179025 - 3179102
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||| || ||||| |||| |||| |||| |||||    
T  3179025 tttttatgaaagtttgtgtaataaagtgtattggaaattgaaaactttaacttttttaaaaattaattacttgattta 3179102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 491
Target Start/End: Original strand, 38354501 - 38354578
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttt-taaaaataatgacttaatttaa 491  Q
    |||||| |||||| |||||||||||| ||| ||||||||||| ||| ||||||||  ||||||||| |||||||||||    
T  38354501 ttttattaaagttagtgtaatcagtgtattagaaattgaaaagtttgacatttttaaaaaaataattacttaatttaa 38354578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 50617583 - 50617507
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||| ||||||||| ||| ||||||||||||  |||||||||| ||| |||||||  ||||||||| ||||||||||    
T  50617583 ttttgatgaaagttagtgcaatcagtgcattaaaaattgaaaagtttgacattttaaaaaaataattacttaattta 50617507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 469
Target Start/End: Original strand, 25042753 - 25042808
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttt 469  Q
    ||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||||||    
T  25042753 tttttataaaagtttgtgtaatcagtacattagaaattgaaaattttaacattttt 25042808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 490
Target Start/End: Complemental strand, 39767295 - 39767218
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||| |||||||||||||| | ||||||||||||| ||||||||   |||||  ||||||||| |||| |||||    
T  39767295 ttttttataaaagtttgtgtaattaatgcattggaaattaaaaactttttaattttgaaaaaataattactttattta 39767218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 490
Target Start/End: Original strand, 41394009 - 41394078
Alignment:
Q  422 aaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaa-aataatgacttaattta 490  Q
    |||||||||||||| |  ||||| ||||||||||||||| || ||||||||| |||||| ||||||||||    
T  41394009 aaagtttgtgtaattaacgcattagaaattgaaaactttaactttttttaaataataattacttaattta 41394078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 490
Target Start/End: Complemental strand, 47937951 - 47937874
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||||||||| || ||| |||| | |||||||||||||| || ||||| || |||||| || |||||||    
T  47937951 ttttttatgaaagtttgtgcaaacagagcatagaaaattgaaaactttgacttttttaaagaataattacataattta 47937874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 505
Target Start/End: Complemental strand, 17970882 - 17970806
Alignment:
Q  430 tgtaatcagtgcattggaaattg-aaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||||||||||||||| |||||||| | |||||  |  |||||| |||||||||| ||| ||||||||||    
T  17970882 tgtaatcagtgcattggaaattgaaaaactttgatattttaaatgaataattacttaatttatcatgcttaaagagt 17970806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 20022278 - 20022234
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaac 457  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||    
T  20022278 ttttttatgaaagtttgtacaatcaatgcattggaaattgaaaac 20022234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 505
Target Start/End: Complemental strand, 21241191 - 21241123
Alignment:
Q  437 agtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||||||||| ||| | |||||| |||||| ||  |||||||||||||  |||||||||    
T  21241191 agtgcattggaaattgaaaattttgatatttttaaaaaatcatttcttaatttaacatgtttaaagagt 21241123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 49795232 - 49795141
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||| ||||||||||||||| |||||||| |||||||||| ||| | | |||  ||||||||| |||| |||||  || ||||||||||    
T  49795232 ttttttataaaagtttgtgtaatcggtgcattgaaaattgaaaattttta-aatttaaaaaaataattactttatttagtatgcttaaagagt 49795141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 490
Target Start/End: Complemental strand, 22889346 - 22889271
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||| | ||||   |||||||| |||||||||| ||| |||||||| ||||| ||| ||||||||||    
T  22889346 ttttatgaaagttagagtaactggtgcattgaaaattgaaaaatttaacatttttaaaaaacaattacttaattta 22889271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 490
Target Start/End: Complemental strand, 22941010 - 22940935
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||| | ||||   |||||||| |||||||||| ||| |||||||| ||||| ||| ||||||||||    
T  22941010 ttttatgaaagttagagtaactggtgcattgaaaattgaaaaatttaacatttttaaaaaacaattacttaattta 22940935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 489
Target Start/End: Original strand, 41370187 - 41370262
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattt 489  Q
    ||||||||||| |||||||||||| ||||||| |||||||||  ||| || ||||| | |||||||  ||||||||    
T  41370187 tttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttttgagaaataatttcttaattt 41370262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 472
Target Start/End: Original strand, 49421937 - 49421972
Alignment:
Q  437 agtgcattggaaattgaaaactttcacattttttaa 472  Q
    |||||||||||||||||||||||| |||||||||||    
T  49421937 agtgcattggaaattgaaaactttaacattttttaa 49421972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 8238037 - 8237961
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| || |||||| ||||||||||    
T  8238037 tttttatgaaagtttgtgtaatcagtgcattgaaaaatgaaaactttgacatttttaaagaataattacttaattta 8237961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 414 - 538
Target Start/End: Original strand, 24299150 - 24299274
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgag 513  Q
    |||||||||||  |||| |||||||||||||||||||| |||| ||| |||||||| |  ||||||  ||||||||||||| |||||| ||| ||||| |    
T  24299150 tttttatgaaaagttgtataatcagtgcattggaaattaaaaaatttgacatttttaaggaataatttcttaatttaacatgcttaaaaagtatttcggg 24299249  T
Q  514 gacactcgttaacaaaactctattt 538  Q
    | || ||||||||||||| ||||||    
T  24299250 ggcattcgttaacaaaaccctattt 24299274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 34299762 - 34299849
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| || ||||||  |||||| || ||| ||||||    
T  34299762 tttttatgaaagtttgtgtaatcagtgctttgtaaattgaaaactttgacatttttaaagaataattgcttaatctagcatgcttaaa 34299849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 414 - 500
Target Start/End: Complemental strand, 19620079 - 19619993
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaa 500  Q
    |||||||||||  |||| ||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||| ||| |||||    
T  19620079 tttttatgaaaagttgtataatcagtgcattggaaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaa 19619993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 3267629 - 3267720
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||| |||||||||||||| ||||||||| |||| ||||||||| | |||||  || |||||| |||| ||||| ||| ||||||||||    
T  3267629 tttttataaaagtttgtgtaatgagtgcattgaaaatggaaaacttttaaattttaaaagaataattactttatttagcatgcttaaagagt 3267720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 412 - 490
Target Start/End: Original strand, 41150032 - 41150110
Alignment:
Q  412 cttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||| ||||| ||||||||||||||  |||||||| |||| ||| |||| || |||||| ||||||||||    
T  41150032 cttttttatgaaaatttgtataatcagtgcattgtgaattgaaatctttaacacttttaaagaataattacttaattta 41150110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 413 - 490
Target Start/End: Original strand, 44452059 - 44452137
Alignment:
Q  413 ttttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||||||||||||||| | ||||||||||||||||||  ||| | |||||| || |||||| ||||||||||    
T  44452059 ttttttatgaaagtttgtgtaataaagtgcattggaaattgaaacttttgatatttttaaataataattacttaattta 44452137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 499
Target Start/End: Original strand, 5482427 - 5482511
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattctta 499  Q
    ||||||||||| ||||||||| || ||||||||||| |||||||||| |||||||  || |||||| |||||||||| ||| ||||    
T  5482427 tttttatgaaattttgtgtaaccaatgcattggaaa-tgaaaactttgacattttaaaagaataattacttaatttagcatactta 5482511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 43492220 - 43492312
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||| |||||||||||||| | ||||||||||||||| ||| ||| |||||| | || |||||| ||||||||||  || ||||||||||    
T  43492220 tttttattaaagtttgtgtaataaagtgcattggaaattgtaaattttgacatttctaaagaataattacttaatttagaatgcttaaagagt 43492312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 39316312 - 39316403
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||| |||||||| |||| || |  |||||||||| ||| ||||| || || |||||| ||||||||||| || ||||||||||    
T  39316312 tttttatgaaagcttgtgtaaccagtacagtaaaaattgaaaattttgacattattgaagaataattacttaatttaatatgcttaaagagt 39316403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 32699443 - 32699401
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaa 456  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  32699443 tttttatgaaagtttgtgcaatcagtgcatttgaaattgaaaa 32699401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 490
Target Start/End: Original strand, 31498656 - 31498724
Alignment:
Q  422 aaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||||| ||||| || |||| |||||||||||||| |||||||  ||||||| | ||||||||||    
T  31498656 aaagtttgtgcaatcaatgtattgaaaattgaaaactttaacattttaaaaaaatatttacttaattta 31498724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 468
Target Start/End: Original strand, 24610856 - 24610911
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacatttt 468  Q
    |||||||| |||||||||||||| |||| ||| |||||| |||||||| |||||||    
T  24610856 ttttttataaaagtttgtgtaattagtgaattagaaattcaaaactttaacatttt 24610911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 528
Target Start/End: Complemental strand, 26871859 - 26871745
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcga 512  Q
    |||||||| ||||||||||||||||||  | || ||||| |||||||| | |||||  || |||||| |||| ||||| ||| |||||| |||  | ||     
T  26871859 ttttttataaaagtttgtgtaatcagtataatgaaaattcaaaacttttaaattttaaaagaataattactttatttagcatgcttaaatagtgctccg- 26871761  T
Q  513 ggacactcgttaacaa 528  Q
    ||||||||||||||||    
T  26871760 ggacactcgttaacaa 26871745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 5907909 - 5907820
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||| || ||||||| ||||||||||||||  |||| ||| ||| |||  ||||||||| ||||||||||  || ||||||||||    
T  5907909 ttttatgaaaattagtgtaattagtgcattggaaataaaaaagtttgaca-tttaaaaaaataattacttaatttagaatgcttaaagagt 5907820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 527
Target Start/End: Complemental strand, 38988770 - 38988680
Alignment:
Q  437 agtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagtttttcgaggacactcgttaaca 527  Q
    ||||||||||||||| || ||||| ||||| || |||||| || ||||||||||| |  ||||| |||| || | | ||||||||||||||    
T  38988770 agtgcattggaaattaaacactttaacattattaaaaaattattacttaatttaaaaagcttaatgagtgttccaaagacactcgttaaca 38988680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 490
Target Start/End: Complemental strand, 46716267 - 46716190
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    |||||||| ||||||||| |||| | ||||||| | |||||||||||| | |||||| || |||||| | ||||||||    
T  46716267 ttttttataaaagtttgtataattaatgcattgaacattgaaaactttgatatttttaaagaataattatttaattta 46716190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 501
Target Start/End: Original strand, 25036987 - 25037071
Alignment:
Q  418 tatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    |||||||||||||| ||| | |||||||| ||||| |||| ||| || ||||| || |||||| ||||||||||| || ||||||    
T  25036987 tatgaaagtttgtgcaataaagtgcattgaaaattaaaaattttgacctttttaaataataattacttaatttaaaatgcttaaa 25037071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 413 - 503
Target Start/End: Original strand, 14309105 - 14309195
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaaga 503  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||| | |||||| || |||||  ||||||||||| || ||||||||    
T  14309105 ttttttatgaaaatttgtgtaattaatgcattggaaattgaaaactttgatatttttaaagaataactacttaatttaatatgcttaaaga 14309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 4695160 - 4695068
Alignment:
Q  413 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||||| | |||||| || ||||||   |||||||| ||| ||||||||||    
T  4695160 ttttttatggaagtttgtataatcagtgcattggaaattaaaaactttaatatttttaaagaataattttttaatttagcatgcttaaagagt 4695068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 414 - 502
Target Start/End: Complemental strand, 26432349 - 26432261
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaag 502  Q
    |||||||||||||| ||||||||||| |||||||||||||||| |||   |||||  ||||||||| ||||||||||| || |||||||    
T  26432349 tttttatgaaagttagtgtaatcagtacattggaaattgaaaagtttattattttaaaaaaataattacttaatttaaaatgcttaaag 26432261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 500
Target Start/End: Original strand, 21259437 - 21259523
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaa 500  Q
    |||||||| ||||||||||||||||||||||| ||||| |||| ||| |||| ||| || ||||||   ||||||||||||||||||    
T  21259437 tttttatggaagtttgtgtaatcagtgcattgaaaattaaaaattttgacatctttaaagaataattttttaatttaacattcttaa 21259523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 26686671 - 26686751
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacat 494  Q
    |||||||||||||||||||||||  || |||| ||||| |||||||| |||||||| || |||| | ||||||||||||||    
T  26686671 tttttatgaaagtttgtgtaatcgatgtattgaaaattaaaaacttttacatttttaaagaatacttacttaatttaacat 26686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 26956402 - 26956482
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacat 494  Q
    |||||||||||||||||||||||  || |||| ||||| |||||||| |||||||| || |||| | ||||||||||||||    
T  26956402 tttttatgaaagtttgtgtaatcgatgtattgaaaattaaaaacttttacatttttaaagaatacttacttaatttaacat 26956482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 36609150 - 36609226
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||| |||||||||||||| ||| ||||| |||||||||||||| | |||||| || |||||| | ||||||||    
T  36609150 tttttataaaagtttgtgtaattagtacattgaaaattgaaaactttgatatttttgaagaataattatttaattta 36609226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 38594950 - 38595037
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    ||||||||||| ||| | |||| | |||||||||||||||||| ||| |||||||  || |||||| |||||||||| ||| ||||||    
T  38594950 tttttatgaaaatttatataattaatgcattggaaattgaaaattttgacattttaaaagaataattacttaatttagcatacttaaa 38595037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 41568708 - 41568775
Alignment:
Q  436 cagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaaga 503  Q
    |||||||||| |||||||||||||| |||||||| || |||||| ||||||||||  || ||||||||    
T  41568708 cagtgcattgaaaattgaaaactttgacatttttgaagaataataacttaatttagtatgcttaaaga 41568775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 16636682 - 16636742
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaa 474  Q
    ||||||| |||||||||||||| ||||||||| ||||||| |||||| | |||||| ||||    
T  16636682 tttttataaaagtttgtgtaattagtgcattgaaaattgacaactttgatatttttaaaaa 16636742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 505
Target Start/End: Complemental strand, 10228397 - 10228315
Alignment:
Q  422 aaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||||||| |||||||| |||||||||||||||| | |||||  || |||||| |||| | ||| ||| ||||||||||    
T  10228397 aaagtttgtgtaaccagtgcatcggaaattgaaaacttttaaattttgaaagaataattacttta-ttagcatgcttaaagagt 10228315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 28639641 - 28639574
Alignment:
Q  413 ttttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataat 479  Q
    |||||||| |||||||||||||| | |||||||||||  |||||||||| |||||||| || ||||||    
T  28639641 ttttttataaaagtttgtgtaataaagtgcattggaagctgaaaactttaacatttttaaagaataat 28639574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 22601862 - 22601785
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    ||||||| ||| ||||| ||||||||  |||| ||||| |||| ||| | |||||| ||||||||| |||||||||||    
T  22601862 tttttataaaaatttgtataatcagtttattgaaaattaaaaattttgatatttttaaaaaataattacttaatttaa 22601785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 505
Target Start/End: Complemental strand, 39177770 - 39177678
Alignment:
Q  412 cttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    ||||||||| |||  ||||| |||||||| ||||||||||||||||||| | |||||  ||  ||||| |||| ||||| || |||||||||||    
T  39177770 cttttttataaaaagttgtgcaatcagtgtattggaaattgaaaacttttaaattttgaaaggataattactttatttagca-tcttaaagagt 39177678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 17774301 - 17774388
Alignment:
Q  414 tttttatgaaagtttgtgtaatca-gtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaa 501  Q
    ||||||||||| |||||||||| | ||| ||||||||||||||| ||| | |||||| || |||||| |||| |||||| || ||||||    
T  17774301 tttttatgaaa-tttgtgtaataaagtgtattggaaattgaaaaatttgatatttttaaagaataattacttgatttaaaatgcttaaa 17774388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 505
Target Start/End: Complemental strand, 5816 - 5758
Alignment:
Q  447 aaattgaaaactttcacattttttaaaaataatgacttaatttaacattcttaaagagt 505  Q
    |||||||||||||| |||||||| || || ||| ||||||||||| |||||||||||||    
T  5816 aaattgaaaactttgacatttttaaagaaaaattacttaatttaaaattcttaaagagt 5758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 35349 - 35273
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaatttaa 491  Q
    ||||||||||||||| |||||||| |||| || |||||||||| ||| ||| |||| ||||||||| |||| ||||||    
T  35349 tttttatgaaagtttatgtaatcattgcactgaaaattgaaaagtttaaca-ttttaaaaaataattacttgatttaa 35273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 19654 - 19578
Alignment:
Q  414 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttcacattttttaaaaataatgacttaattta 490  Q
    ||||||||||| |||||||||||  |  |||  |||||||||||||| |||||||| || |||||| ||||||||||    
T  19654 tttttatgaaaatttgtgtaatcgatatattaaaaattgaaaactttaacatttttaaagaataattacttaattta 19578  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 451
Target Start/End: Original strand, 13355 - 13391
Alignment:
Q  415 ttttatgaaagtttgtgtaatcagtgcattggaaatt 451  Q
    ||||||||||||||||||||| | |||||||||||||    
T  13355 ttttatgaaagtttgtgtaattattgcattggaaatt 13391  T

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